Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00729 ATGACTTCGTCGGAGAAGAATATTACGGAAATGCCATCGGGAAGAAGAGTGGAGGATAAGCGTTATCCTGTGCCTCTCACCTCTCATGAGGAGGTTGTTAGTGATCCAATGGTTTTCCTGCACACTCTCAGGCGTTTTCATTCTTTGTTGGGTACCAGGTTCATGATTCCGGTGATTGGAGGGAAGGAGTTGGATTTGCATCTTCTGTACGTGGAAGTTACCAAAAGGGGTGGTTTTGAAAAGGTTGTTGAAGAGAAGAAATGGAGGGATGTGAGCACAGTTTTCAGCTTCTCTCCAACGACAACAAGTGCTTCTTACGTGTTAAGGAAACACTACTTGAGTCTTCTCCACCATTACGAGCAAGTTTACTTCTTTAAGCTACAGGGTCCCGTGCTCCCTCCAACAGTTGCATTGCCTTTTAAGAGCCCGTCATGCAGCCCTGCAACGCCCGATCTTATCGATTCTGCTTCTGTTTCCATGCAACTACAGCAAAAGCAGATACCCCAGAAGAGGACCAGAAGTTCTTCCGATTTCCTTATCGGAGCACCCACATTTTTTCCAGTGATGGGAACAATTGACGGGAAATTTGACTGCGGTTACTTAGTGACTGTAAAATTGGGTTCGGAGACGCTCCGTGGAGTACTCTACCATCCATCGGCGTTGGGCTCATCTTCCACTTCTTCAGTGCAACCTAACAATGCCATTGTCACTTACAACCCGCTTCCTCACCCGCATAGTAGGAAGAGGAGACGACGAAGACGCGGAGACCCTGGACGTCCAAAACCCAACAGGAGCGGTTACAACTTTTTTTTCTCTGAAAAGCATTCCAAGCTGAAATCTCTCTACCCAAATAGAGAAAGAGAGTTTACTAAAATGATCGGAGAGTCTTGGAGTAAACTCAGCCAGGAAGAGAGAGTGGTATATCAGAACATTGGGTTGAAGGATAAGGAGAGATACAAGAGAGAGTTGAAGGAGTACAAGGAGAGATTGAAAATTTTACAGACTACGGAAGATCGAAGAACTGATCCTTCAAGTCAAGCCAATACGAAATGA 1053 0.4568 MTSSEKNITEMPSGRRVEDKRYPVPLTSHEEVVSDPMVFLHTLRRFHSLLGTRFMIPVIGGKELDLHLLYVEVTKRGGFEKVVEEKKWRDVSTVFSFSPTTTSASYVLRKHYLSLLHHYEQVYFFKLQGPVLPPTVALPFKSPSCSPATPDLIDSASVSMQLQQKQIPQKRTRSSSDFLIGAPTFFPVMGTIDGKFDCGYLVTVKLGSETLRGVLYHPSALGSSSTSSVQPNNAIVTYNPLPHPHSRKRRRRRRGDPGRPKPNRSGYNFFFSEKHSKLKSLYPNREREFTKMIGESWSKLSQEERVVYQNIGLKDKERYKRELKEYKERLKILQTTEDRRTDPSSQANTK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00729 350 MobiDBLite consensus disorder prediction 221 239 - -
Eupl13g00729 350 MobiDBLite consensus disorder prediction 1 20 - -
Eupl13g00729 350 Pfam ARID/BRIGHT DNA binding domain 39 120 IPR001606 GO:0003677
Eupl13g00729 350 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677
Eupl13g00729 350 SUPERFAMILY ARID-like 27 131 IPR036431 GO:0003677
Eupl13g00729 350 CDD HMG-box_AtHMGB9-like 260 326 - -
Eupl13g00729 350 MobiDBLite consensus disorder prediction 243 258 - -
Eupl13g00729 350 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 260 327 IPR009071 -
Eupl13g00729 350 Pfam HMG (high mobility group) box 260 327 IPR009071 -
Eupl13g00729 350 Gene3D - 26 129 IPR036431 GO:0003677
Eupl13g00729 350 Coils Coil 316 336 - -
Eupl13g00729 350 SMART bright_3 34 125 IPR001606 GO:0003677
Eupl13g00729 350 MobiDBLite consensus disorder prediction 221 268 - -
Eupl13g00729 350 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 338 - -
Eupl13g00729 350 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677
Eupl13g00729 350 SMART hmgende2 259 328 IPR009071 -
Eupl13g00729 350 SUPERFAMILY HMG-box 257 330 IPR036910 -
Eupl13g00729 350 Gene3D High mobility group box domain 244 340 IPR036910 -
Eupl13g00729 350 SMART ARID_2 30 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00729 Eupl-Chr13 10692581 10696904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00729 9 332 ARID Transcription Factor Family AT1G76110 58.410 1.65e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl13g00729 ARID 1.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00729 - - ming:122083604 434.106