Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00728 ATGGAATCTCTGAGAAAATCCTTCAAATCACATAGTTCTTACAGGCCCATGAAGGCGATATCTGCGGGAGGAGGAGAGCAAGAACAACACCCCGAAAAGCAGCCCATCCTCTACGATCATACCGACGATCACATGATGAGCTCCGGTGATTCTGACGACCGGAGAGAGGTGGTCGTCAAGGTTGATGACGACAAAAACAAGAACAACAATGGTAAAATAACTATAACAAGAGATGTTAAGCTTGCTGTGGAGCCCAATGGGAGTAATATATGGAGGGGGTCGAGCTACGATTTCTGGAAAGATGGCGGTCCGATGAGCGGAAATAGAGGCAATGCGGAGGGCCGGAGCAGCGATGGGTTTGATTTTCAGCAGAGGCGACAACAAGGGCTCGAAGATCCGCCTTCGAAGCTAATTGGACAGTTCTTGCATAAGCAGAAGGCTTCCGGGGAGATTTCTTTGGATATAGATTTGGAGATGGATGAGCTTCGAGATGATCAAAGCTTACCAATGGTTTCAGAGAGTCCAACTAACCAGCAGGCCACGTCGAAGGAGCTCAGGGTTGTGCAGTCCAACGCTGGACTTTGGGAATTCTTAAGAAGTAGAACTAGAAACAGAGGACGCACTTTCGCAACAAGCAACTATTTTTTGCGGACCAGAGAGAGAGAGAGAAAAATGGAGTCCAACTTGAAGAGCGATGATGCCGTAGTAGGATACAGCAGCAGCAACGTAAAGAAGGCCCGGTTGCAATCTACGCTCTCCGCTATCCTCGACGATCCCATACTCGCCGACGTACCGAAGAAACCGACCCTCGCTGACGTGGACACCCTAATCAGCTTGGAAATGGGCAGCGCCATGAGAATCTGTGTCGTTAAAATGGACGGCACCTCATTCGATGTTGCAGTGTTGAATTCTGCAACTGTTAAGGATTTGAAATTAGCAATCAAAAAGAAAACAAACGAAATAGAGCAATCACAGATGGGCCATCGCCACATTTCATGGAGGCATGTTTGGGGAAACTTTTGCCTTTCCTACCATAATGAGAAGCTAATTGATGACAACTCTGTGCTTCAGGACTTTGGCGTACGTAATAACTCTCAGATACTGCTTTTATACAGGTGCAATTTGTTCCCCATGTCATGTCAAGGGTATCTCGGAGACACTCCCGGAGGAGAAAACACCGCTTCTTTCATGGTCTTAGCAAGCGGTTGTGACCGACCAATCATCCTTAACTCAAGAATGACCCAAGGTTGTGAGGTGCGACTGTTGACGGTTATGCTCTTTCAAGATGATAAACTCCACAAGGGTTGTGAAGATACTGCCCAACACATTGACTCGAGGGACAAAGAAGAGGTGAGGAATGGTTTCTTCTCAAGAATCGCAGGAGGACATATAGGAGACACATTCAGGCCTCTGTGCAAGGAAAGCTCCAATGAGAACTTTTTATGA 1446 0.471 MESLRKSFKSHSSYRPMKAISAGGGEQEQHPEKQPILYDHTDDHMMSSGDSDDRREVVVKVDDDKNKNNNGKITITRDVKLAVEPNGSNIWRGSSYDFWKDGGPMSGNRGNAEGRSSDGFDFQQRRQQGLEDPPSKLIGQFLHKQKASGEISLDIDLEMDELRDDQSLPMVSESPTNQQATSKELRVVQSNAGLWEFLRSRTRNRGRTFATSNYFLRTRERERKMESNLKSDDAVVGYSSSNVKKARLQSTLSAILDDPILADVPKKPTLADVDTLISLEMGSAMRICVVKMDGTSFDVAVLNSATVKDLKLAIKKKTNEIEQSQMGHRHISWRHVWGNFCLSYHNEKLIDDNSVLQDFGVRNNSQILLLYRCNLFPMSCQGYLGDTPGGENTASFMVLASGCDRPIILNSRMTQGCEVRLLTVMLFQDDKLHKGCEDTAQHIDSRDKEEVRNGFFSRIAGGHIGDTFRPLCKESSNENFL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00728 481 CDD Ubl_SNRNP25 284 367 IPR040610 -
Eupl13g00728 481 MobiDBLite consensus disorder prediction 1 53 - -
Eupl13g00728 481 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 235 367 IPR039690 GO:0000398|GO:0005689
Eupl13g00728 481 ProSiteProfiles Ubiquitin domain profile. 285 372 IPR000626 GO:0005515
Eupl13g00728 481 Gene3D - 279 375 - -
Eupl13g00728 481 MobiDBLite consensus disorder prediction 32 53 - -
Eupl13g00728 481 SUPERFAMILY Ubiquitin-like 280 372 IPR029071 -
Eupl13g00728 481 Pfam Ubiquitin-like domain 285 367 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00728 Eupl-Chr13 10665561 10689805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00728 50 175 Mechanosensitive Ion Channel Family AT1G78610 48.507 1.88e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00728 K13153 - nnu:104590231 241.506