Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00717 ATGGCCTATTCCTCCCGTAGAAGGTATTCACGATCTCCTTCCCCTAGACCACGTTCCAGATCTAGATCCAGGTCCAGGTCCAGGTCCAGATCAAGGCCCCGGTCCCGATCCCGATCTAGATCCAGGTCTCGCGACAGGAACGATGCTTTGAATCCTGGAAATACACTCTATGTGACTGGCCTGTCTAGTAGGGTCACAGAAAGGGGCCTTGAGGATCACTTCTCCAAGGAGGGAAAGGTAATTTCATGTCATCTGGTAGTGGAGCCCCGTACACGCATCTCTCGAGGTTTTGCTTTTGTGACCATGGATACCCTCGAGGACGCCAATCGTTGCGTCAAACATCTCAATCAGTCAGTTTTGGAAGGGCGTTACATAACTGTGGAGAAGTCAAGGAGGAAACGTCCAAGGACACCCACACCTGGAAACTATCTTGGAGTGGCAAGCGCCAGAGCATCCCGCTATCATGGCGATCATGGTAGGCACAGTGGTGGCTATGGGTACCGAAGGTCTCCGAGGCGCTCACCTTATCGAGGCAGCCGCGAATATTCTCCTCGCCGCTCGCCGTATGGTGGTCAGTCAAGAAGAGATCGGTCTAGGTCACTCCCTTATTCTCCTCACAATAGCCCAGAAAGGAGCTATGCTCGTCGTTCTAATGTTCATTCAAGGTGA 669 0.5247 MAYSSRRRYSRSPSPRPRSRSRSRSRSRSRSRPRSRSRSRSRSRDRNDALNPGNTLYVTGLSSRVTERGLEDHFSKEGKVISCHLVVEPRTRISRGFAFVTMDTLEDANRCVKHLNQSVLEGRYITVEKSRRKRPRTPTPGNYLGVASARASRYHGDHGRHSGGYGYRRSPRRSPYRGSREYSPRRSPYGGQSRRDRSRSLPYSPHNSPERSYARRSNVHSR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00717 222 MobiDBLite consensus disorder prediction 126 145 - -
Eupl13g00717 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 125 IPR000504 GO:0003723
Eupl13g00717 222 MobiDBLite consensus disorder prediction 151 222 - -
Eupl13g00717 222 SMART rrm1_1 55 128 IPR000504 GO:0003723
Eupl13g00717 222 CDD RRM_SF 56 128 - -
Eupl13g00717 222 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 212 - -
Eupl13g00717 222 SUPERFAMILY RNA-binding domain, RBD 47 164 IPR035979 GO:0003676
Eupl13g00717 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Eupl13g00717 222 MobiDBLite consensus disorder prediction 11 40 - -
Eupl13g00717 222 Gene3D - 3 139 IPR012677 -
Eupl13g00717 222 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00717 Eupl-Chr13 10519505 10527210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00717 53 139 Eukaryotic Initiation Factors Gene Family AT1G49760 29.885 2.68e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00717 K12897 - nnu:104604387 241.506