Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00654 ATGGCTCCTCAACAACAACCAGACTCTGTACTCCTTCTCGACGCTCTCTACTGCGAAGAGGAGCGGTGGGAGGAAGAAGAGGGCTTGGACGAAGAAGAGAGCGAGAACAGCAGCAACAATGGAGCTAACCCTTCTCTTCTTCCTCTACTATTATTAGAACAAGACTTGTTTTGGGAAGATGAAGATCTTATCTCTCTTTTCTCCAAGGAACAAGATACCCATCTCATAATCACCAATCTCGACAACGATCCGTCTCTCGCGGCGGCCCGTCGCGTCGCCGTTGAGTGGATGCTAAGAGTCAATGCTCACTATGCCTTCTCTGCTCTCACCGCAGTTCTCGCTGTTAACTACCTCGATAGGTTCATTTCAAGCCTTAAATTCCAGAGAGACAAGCCATGGATGACCCAACTCGCTGCTGTTGCTTGTCTCTCTCTAGCTGCAAAGGTTGAAGAGACCCAAGTTCCTCTTCTCTTAGACCTGCAAGTAGAGGATACGAAGTATGTGTTTGAGGCGAAAACGATTCTGAGAATGGAGCTTCTTGTGCTTTCCACGCTTCATTGGAAGATGAACCCGGTAACCCCTCTTTCGTTCCTTGATCACATTATAAGGAGGCTTGGATTGAAGACCTATCTCCATTGGGAGTTTCTCAGGAATTGCGAGCGTCTCCTTCTCTCTGTTATTGCTGATTCAAGGTTTGCTTGTTTGCTTCCTTCTGTGTTGGCTACTGCAACAATGCTGCGTGTTATAGACCAGGTTGAGCCTTGTAATCCAATCGAATATCAAAATCAGCTCATGGGTGTTCTCAAAATCAGCAAGGACAAAGTTGACGATTGTTATCAACTCATCCTGGAATCAACTCTAGACGACAGCCATGGCCACAACCACAACAACAAACGCAAGTATCCATCCATACCCAGCAGCCCAAACGGCGTAATCGACGCGTCGTTCAGCTGTGAGAGCTCAAACGATTCGTGGGTTGTGGCTTCATCGTTTACGTCGTCTCCTGAACCTCTGTTCAAAAAAAGCAGAGCCCAAGATCAGCAGATGCGACTTCCATCCTTCAACCGAGTGTTTGTGGATGTCCTGAACAGCCCTCCTTAA 1101 0.475 MAPQQQPDSVLLLDALYCEEERWEEEEGLDEEESENSSNNGANPSLLPLLLLEQDLFWEDEDLISLFSKEQDTHLIITNLDNDPSLAAARRVAVEWMLRVNAHYAFSALTAVLAVNYLDRFISSLKFQRDKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDTKYVFEAKTILRMELLVLSTLHWKMNPVTPLSFLDHIIRRLGLKTYLHWEFLRNCERLLLSVIADSRFACLLPSVLATATMLRVIDQVEPCNPIEYQNQLMGVLKISKDKVDDCYQLILESTLDDSHGHNHNNKRKYPSIPSSPNGVIDASFSCESSNDSWVVASSFTSSPEPLFKKSRAQDQQMRLPSFNRVFVDVLNSPP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00654 366 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Eupl13g00654 366 Gene3D - 191 280 - -
Eupl13g00654 366 SMART cyclin_7 95 183 IPR013763 -
Eupl13g00654 366 FunFam D3-type cyclin 83 190 - -
Eupl13g00654 366 Pfam Cyclin, C-terminal domain 192 303 IPR004367 -
Eupl13g00654 366 Pfam Cyclin, N-terminal domain 81 190 IPR006671 -
Eupl13g00654 366 PANTHER CYCLINS 58 289 IPR039361 -
Eupl13g00654 366 CDD CYCLIN_AtCycD-like_rpt2 192 282 - -
Eupl13g00654 366 Gene3D - 87 190 - -
Eupl13g00654 366 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Eupl13g00654 366 SUPERFAMILY Cyclin-like 58 190 IPR036915 -
Eupl13g00654 366 SMART Cyclin_C_2 192 320 IPR004367 -
Eupl13g00654 366 SUPERFAMILY Cyclin-like 193 303 IPR036915 -
Eupl13g00654 366 FunFam CYCLIN D32 191 280 - -
Eupl13g00654 366 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00654 Eupl-Chr13 9615801 9617783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00654 4 288 Core Cell Cycle Gene Families AT4G34160 61.404 2.25e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00654 K14505 - nnu:104607102 492.656