Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00627 ATGGCGCAGGTTCAAGTCCAGCCCCAGCCTCCCCTCTCAGGTCCGAATGGAGCGGCGAACAGTGGGGGCAACCAGTTCGTTTCGACGTCTCTGTACGTAGGGGACCTCGAGTTTACTGTTACGGACTCACAGCTCTACGATCTGTTTAGCCAACTCGGCCAGGTTGTCTCGGTTCGCGTCTGCAGGGACTTGAGCACCCGGCGGTCCCTCGGTTATGCTTATGTTAACTATAGCAACACCCAAGACGCGGGAAGGGCATTGGATGTGCTGAACTTCACTCCTGTCAATGGCAAGTCCATTAGGATAATGTATTCTCATCGTGACCCTAGCATTCGTAAAAGTGGGACTGCTAATATATTTATCAAGAATCTTGACAAGGCAATTGACCACAAAGCACTACATGAAACATTTTCTGCATTTGGAAATATTCTCTCTTGCAAGATAGCTACAGATCCTTCTGGCCAGTCAAAGGGCTATGGATTTGTTCAATTTGACAACGAGGAATCAGCCCAAAATGCAATAGATAAGCTGAATGGCATGCTGCTGAATGATAAACAAGTTTTTGTTGGACCCTTTCTTCGTAAGCAGGAAAGAGAGACTGCTATAAACAAGGCAAAATTCAATAATGTCTTTGTTAAAAATCTATCAGAGTCAACTACAGAAGAAGATCTGAAGAAAATTTTCGGTGAATATGGAATAATTACTAGTGTTGTAGTGATGAGGGATGGAGATGGCAAATCCAAGTGTTTTGGATTTGTTAACTTTGAGAATACAGATGATGCAGCTCAATCTGTTGAGGCCCTTAATGGGAATAAATATGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAGCTTGAACTGAAAGGCCGATTTGATCAGAATACGAAGGAAGCAGTTGACAAATTTCAAGGGGTGAACTTATACGTAAAGAATTTAGAAGATACCATCGGCGACGATAACCTGAGGGAAATGTTCTCAGAGTTTGGCACAATTACTTCATGCAAGGTTATGCGAGACCCTAATGGAGTTAGTAGGGGTTCGGGATTTGTTGCTTTCTCAACTCCTGAAGAAGCATCTCGAGCTCTTGCGGAGATGAATGGCAAAATGGTTGTTAACAAACCTCTTTACGTTGCACTTGCACAGCGCAAAGAAGATAGAAGAGCAAGGTTGCAGGCACAATTTTCTCAAATGCGGCCAGTTGCAATGGCACCTTCTGTTGCTCCTCGTATGCCAATGTATCCCCCGGGTGGTCCTGGTCTTGGACAACAAATATTTTATGGTCAAGGCCCCCCTGCTATCATTCCTCCCCAGCCTGGGTTTGGGTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCACCAATGCCAAATTTCTTTGTGCCAATGGTCCAGGGTCAGCAGGGTCAACGTCAGGGTGGCAGACGTGCGGGAGCAGGACCTGTGCAACAAAACCAGCAACCGGTGCCCCTAATGCAGCAGCAGATGCTTCCAAGGGGACGCATGTATCGTTACCCGCCGGGTCGTAACATGCCTGATGTTCCCATGCCGGGGGTTGCTGGAGGCATGCTTTCTGTTCCATATGATATGGGTGGTATGCCTTTACGTGATGCTGCAGTGCCACAACCTATCCCAATAGGAGCTTTGGCTTCTGCTCTTGCAAATGCAACACCTGAACAGCAGAGGACGATGCTGGGTGAAAGTCTATATCCACTTGTGGATCAGCTGGAGCATGATATGGCGGCCAAGGTCACCGGCATGCTTCTGGAAATGGACCAGACTGAGGTTTTGCACTTGCTCGAATCGCCTGAGGCTCTGAAAGCGAAAGTTGCGGAAGCCATGGAGGTTCTGAGGAATGTCGCTCAGCAGCAGCAGCAGCAGCAGCAGACCAGCAGCCCAACTGATCAATTGGCCTCGCTTTCTTTGAACGATACCCTAGTCTCCTAA 1968 0.4756 MAQVQVQPQPPLSGPNGAANSGGNQFVSTSLYVGDLEFTVTDSQLYDLFSQLGQVVSVRVCRDLSTRRSLGYAYVNYSNTQDAGRALDVLNFTPVNGKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHETFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLLNDKQVFVGPFLRKQERETAINKAKFNNVFVKNLSESTTEEDLKKIFGEYGIITSVVVMRDGDGKSKCFGFVNFENTDDAAQSVEALNGNKYDDKEWYVGKAQKKSERELELKGRFDQNTKEAVDKFQGVNLYVKNLEDTIGDDNLREMFSEFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVNKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQGPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQGQQGQRQGGRRAGAGPVQQNQQPVPLMQQQMLPRGRMYRYPPGRNMPDVPMPGVAGGMLSVPYDMGGMPLRDAAVPQPIPIGALASALANATPEQQRTMLGESLYPLVDQLEHDMAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQQQQQTSSPTDQLASLSLNDTLVS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00627 655 FunFam Polyadenylate-binding protein 548 630 - -
Eupl13g00627 655 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Eupl13g00627 655 PANTHER RNA BINDING PROTEIN 28 91 - -
Eupl13g00627 655 MobiDBLite consensus disorder prediction 1 20 - -
Eupl13g00627 655 FunFam Polyadenylate-binding protein 294 399 - -
Eupl13g00627 655 SUPERFAMILY RNA-binding domain, RBD 28 198 IPR035979 GO:0003676
Eupl13g00627 655 Gene3D - 298 397 IPR012677 -
Eupl13g00627 655 Gene3D - 199 297 IPR012677 -
Eupl13g00627 655 FunFam Polyadenylate-binding protein 198 293 - -
Eupl13g00627 655 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Eupl13g00627 655 SMART rrm1_1 209 281 IPR000504 GO:0003723
Eupl13g00627 655 SMART rrm1_1 30 103 IPR000504 GO:0003723
Eupl13g00627 655 SMART rrm1_1 118 190 IPR000504 GO:0003723
Eupl13g00627 655 SMART rrm1_1 312 384 IPR000504 GO:0003723
Eupl13g00627 655 SMART rrm2_1 30 103 IPR003954 GO:0003676
Eupl13g00627 655 SMART rrm2_1 312 384 IPR003954 GO:0003676
Eupl13g00627 655 SMART rrm2_1 118 190 IPR003954 GO:0003676
Eupl13g00627 655 SMART rrm2_1 209 281 IPR003954 GO:0003676
Eupl13g00627 655 Coils Coil 614 634 - -
Eupl13g00627 655 MobiDBLite consensus disorder prediction 629 655 - -
Eupl13g00627 655 FunFam Polyadenylate-binding protein 118 191 - -
Eupl13g00627 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Eupl13g00627 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Eupl13g00627 655 SUPERFAMILY PABC (PABP) domain 493 639 IPR036053 GO:0003723
Eupl13g00627 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Eupl13g00627 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Eupl13g00627 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Eupl13g00627 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Eupl13g00627 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Eupl13g00627 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Eupl13g00627 655 SMART poly_2 564 627 IPR002004 GO:0003723
Eupl13g00627 655 CDD RRM1_I_PABPs 30 109 IPR034364 -
Eupl13g00627 655 CDD RRM3_I_PABPs 207 286 - -
Eupl13g00627 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Eupl13g00627 655 CDD RRM4_I_PABPs 310 388 - -
Eupl13g00627 655 FunFam Polyadenylate-binding protein 16 117 - -
Eupl13g00627 655 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Eupl13g00627 655 Gene3D - 547 632 - -
Eupl13g00627 655 Gene3D - 1 104 IPR012677 -
Eupl13g00627 655 CDD RRM2_I_PABPs 115 191 IPR045305 -
Eupl13g00627 655 Gene3D - 106 198 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00627 Eupl-Chr13 9215376 9224289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00627 28 654 Eukaryotic Initiation Factors Gene Family AT1G49760 71.743 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00627 K13126 - nnu:104601728 1110.9