Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00626 ATGATCAGTGATTTTAGTTGGAACTGGTACGAGGAAACAAACACGGAGAAGAAGCCGGGATCTTCAATCTTGTGTAGGGAAGAAATAGAAGAAAGTATGTGGAATCTCAATGATTCGCCTGATCAGAGGAGAGAGGAAATATCTGAAGGGTGTTCTTCCCAGAAGACCTCTGGTGAAGGAGATGATGAGAAGGGTAAAAGGGTCGGATCGGTTTCGAATGAGAATTCGAGTTCTTCGGCTGTGGTTGTCGAGGATGGATCCGATGATGAGGAACGAGGATGCGGAGGAGGGAGGAGGAGGAGGAAGAGTAGTAGTAAGATCTTCGGTTTCTCGGTTACCCATGAAGACAACTTCTCTTCTGAGAGTGAACCGGTGGTCACCCGGCAGTTTTTTCCGGTTGAGGAGTCGGAGATAGAGACGACGCCAACGGGTGGAGGTCCGGCTTCGTTTCCAAGGGCTCACTGGGTCGGGGTGAAATTCTGCCAGCCGGAGCCACTTGGGGCTGGTAAATCCACGGAGGTTTCACAGCCGATGAAGAAAAGTCGGCGAGGACCTAGGTCTAGAAGCTCTCAGTATCGTGGTGTTACCTTCTACAGGAGAACCGGCCGTTGGGAGTCCCATATATGGGATTGTGGAAAGCAAGTTTATTTGGGTGGATTCGACACTGCACATGCGGCTGCACGTGCGTATGATAGAGCGGCTATCAAGTTCCGGGGAGTGGAGGCAGATATAAATTTTAGTCTCGATGATTATGAGGATGATCTGAAACAGATGACTAATCTAACTAAGGAGGAATTTGTTCATGTACTTCGCCGACAAAGTACCGGATTTCCTAGAGGAAGCTCCAAATATAGAGGCGTTACTTTGCACAAATGTGGAAGATGGGAGGCTCGAATGGGGCAGTTCTTGGGCAAAAAATATGTTTATTTAGGCCTCTTCGACACCGAAATTGAAGCAGCCAGGGCTTATGATAAAGCTGCGATCAAGTGTAATGGAAAGGAGGCTGTGACCAACTTTGATCCTAGTATATATGAAAACGAGCTCAATTCCACTGGTAATGACACCAATCATAATCTCGATTTGAGCTTGGGGAGTTCGGCGTCGAAAAGTGACATTCTTGAATCGGTGGACGACAACCGATCGATTGCCGTCGATCAACAATCGTCGTTTGAACCTGGTTGGAGGAATAACCACTGTGGCTTTAGGCCTAAGTTTGATGACAAACTCAAGTTGCCGGGTGAACAATGTAGAAGCGATAGCAATCCTTACAGACGAGATGGGTGTGATGAGAGTGAGGCCATTAGGATGCTCAACCATACCCATATCCAATCCCCAATCCAATTCCGGGTCAATGAAAGTCACAGATATGGGCAGCTAAAATACCCAATGGTTAACATCCTACACCAGCACTTAAGTCCTCCAAATTATCAATTTTCAAGCAGCAGTGATGGAGTTAGAATTGGTGGAGGATTTGTAGGAGGGCTTTCTCTAGCAACGGGTGAACAACAACAACAGCAACAACAAAGGCAATCAGGTTGGAACAAAGGCACTAATATCTGGCCTTCTGGTTCATCCCAACTGTTTGCAACCGCTGCAGCATCATCAGGATTCCCATCGCCGATAATAAAACCCCCAACTTGGCTGCAAAAGAACGGGTTCCACTCTCTCACGAGACCCACTTAA 1683 0.473 MISDFSWNWYEETNTEKKPGSSILCREEIEESMWNLNDSPDQRREEISEGCSSQKTSGEGDDEKGKRVGSVSNENSSSSAVVVEDGSDDEERGCGGGRRRRKSSSKIFGFSVTHEDNFSSESEPVVTRQFFPVEESEIETTPTGGGPASFPRAHWVGVKFCQPEPLGAGKSTEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLDDYEDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSTGNDTNHNLDLSLGSSASKSDILESVDDNRSIAVDQQSSFEPGWRNNHCGFRPKFDDKLKLPGEQCRSDSNPYRRDGCDESEAIRMLNHTHIQSPIQFRVNESHRYGQLKYPMVNILHQHLSPPNYQFSSSSDGVRIGGGFVGGLSLATGEQQQQQQQRQSGWNKGTNIWPSGSSQLFATAAASSGFPSPIIKPPTWLQKNGFHSLTRPT* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00626 560 SUPERFAMILY DNA-binding domain 190 248 IPR016177 GO:0003677
Eupl13g00626 560 MobiDBLite consensus disorder prediction 21 69 - -
Eupl13g00626 560 MobiDBLite consensus disorder prediction 1 20 - -
Eupl13g00626 560 CDD AP2 282 342 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 SUPERFAMILY DNA-binding domain 282 342 IPR016177 GO:0003677
Eupl13g00626 560 MobiDBLite consensus disorder prediction 166 192 - -
Eupl13g00626 560 CDD AP2 191 246 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 ProSiteProfiles AP2/ERF domain profile. 283 340 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 Pfam AP2 domain 282 331 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 Pfam AP2 domain 191 239 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 MobiDBLite consensus disorder prediction 1 103 - -
Eupl13g00626 560 SMART rav1_2 191 253 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 SMART rav1_2 283 346 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 Gene3D AP2/ERF domain 190 248 IPR036955 GO:0003700|GO:0006355
Eupl13g00626 560 Gene3D AP2/ERF domain 282 341 IPR036955 GO:0003700|GO:0006355
Eupl13g00626 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 430 - -
Eupl13g00626 560 ProSiteProfiles AP2/ERF domain profile. 191 247 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 FunFam AP2-like ethylene-responsive transcription factor 282 342 - -
Eupl13g00626 560 FunFam AP2-like ethylene-responsive transcription factor 190 249 - -
Eupl13g00626 560 PRINTS Ethylene responsive element binding protein signature 322 342 IPR001471 GO:0003700|GO:0006355
Eupl13g00626 560 PRINTS Ethylene responsive element binding protein signature 284 295 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00626 Eupl-Chr13 9200527 9204100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00626 33 368 AP2-EREBP Transcription Factor Family AT4G36920 69.209 6.10e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Eupl13g00626 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00626 K09284 - nnu:104601729 665.996