Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00621 ATGGTTCGGAAGAAGCCCACCGCCCGGGATGACGATAATCCTGCTGTGGGTGGGGCCAAATCCAAGAAGAAAGGGCGGGCCATCGACGACGATGAGTATTCCGTCGGGACAGAGTTATCTGAGGATCAACCACAGCAGGACAACGAAGAGGAATCACTGCCCGCTTCTGGGAAGAAGAAGGGCAAGAAGGGTAGTTCTAAGGCAGCACAACATAGGGAGGAAGACCAAGATAGTACTGTTGAAGCAGAGGAAGGCGATGCTCCTCCGATTGTCTTCTCCGGTAAGAAGAAGTCGAAGACCAAGAAGAGTGGTAACAGTCTGTTTAGCGCGTCTACTTTTGGTGCCCTTGAAGAGGAGGATAATGATGAGGAACCTCCACCTAGTGTTGGTGAGGAGGCAGATGAGTATAAAGAGATTGATGATGGGGATGAGGGAGAGGACGGTTCGGTTGTTACTTTCTCTGGTAAGAAGAAGTCTTCCAAATCTTCCAAGAAAAGTAATAGCTTGTTTACTACGTCTGCTTTTGATGCCATTCTTGATGAAGGGGATGGGGATGGGAATGATAATGTTGAATTGGAACAGCGATCCACGGATGAAAATGAAGATGCCCCAGTAATTGCTTTTACTGGGAAGAAGAAGTCTTCGAAGAAGAGCAGTAGCTTGTTTGCAGCCTCTAGTTTTGATGGTTTAGATGAAGGGGATGATGGCAAGGATGAAAATAAAACAGAGGAGGAAGATGCCCCTGTGATTACTTTCTCTGGGAAGAAGAAGTCCTCGAAATCTTCCAAGACGAGCAGTAGCTTGTTTACCGCTGCACTCCTTGATGAAGAGGATGGCAACGATGTTTCGGTATCTGAACAACAGCCCACCATGAAGTCTGGTGATGACACTATTGATGACAACAGAGAGGAGAATGAAGACCCCTTAACAATTGCTTTTTCTGGGAAGAAGAAGTCATCAAAATCCAAGAAGAACAATAGTCTAATTTCTGCCTCCGGTTTTGATACCAACCTTGGAGATGAAGCTGCTGATGTAACTGAACCCGAAGAACCTTCTGTGAGAGGCATTAGTAATGAAGCTGATGGAAAGTATGCTATTGATGCCACAGTTAATAAACAGGGAAATGAGGATGTGGTAGAGACTTCCAAGAACAAAAAGAAGAAGAAGAAGAGTGGACGGACTGTTCAAGAGGAGGAGGATCTGGACAAAATTCTTGCTGAGCTTGGTGAAGGCCTTACTCATTCAAACACTGCCCCTGCCCCGCAAGAAGAGAAGGTTCAAGTTCAGCCCGAACCAGTTGGCCCAGTTGATGCTAAAGGTGAGGAGAAGGAAGCCGAAGCAGAAGCAGAAGGCGGGGAGTCTGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAAGAGAAGAAGGCAGCGGCAGCAGCTGCTGCAGCCGTAGTTGAGGTAAAGGAAGAAAAACAGAAGGAAACAAAGAATAAAGTTTCCGACAAGAAGGTCCCGAAGCATGTCAGAGAAATGCAGGAAGCTCTGGAAAGGCGTAAAGAAGCTGAAGAGAGAAAGAAGAGAGAAGAAGAGGAGAGGTTGAAGAAGGAAGAGGAGGAGCGTCGCAGGCAAGAGGAGCTCGAGAGGCTGGCGGAGGAGGCCAGGCGCAGGAAAAAGGAGAGAGAAAAGGAGAAGCTTCAGAAGAAAAAACAGGAAGGCAAGCTTTTAACAGGAAAGCAGAAGGAAGAAGCCCGTCGGTTGGAGGCGATGAGGAATCAGTTTCTTGCTCAGAGTGGTGTACTTCCCACCGCTGACATTGGCAGTGTCACGACAAAACGGCCAAAGTATCAAACAAAGAAGGCTAAGCCGGCTCCTATACAAGCAAATGGTGAGGCCTCTGTAGAGGTCGTGGAGAACATAGAGGCAACGGAAAACCAGCAAGACACTGTACCTATGGTGGATGCATTAGAAGTTGAGAAGGTTGAAGAAGTAGAGTCAACTGTAGGAGAAGCTGAGCAGAAATTGGAAGCCGAGCATGGGGTTGAAGAGAATGGAATTGAAGAAGAAGATGATGATGAGGATGAATGGGATGCGAAGAGCTGGGATGATGCTGTTGTCAACTTGCCTGTTAAGAGTGCATTTGCTGAGGAAGAGGAAGAGGAAGAGGCTGAGTCTGAGCCTGTGCTTGTGGCGAAGAAAGAGACCAAGCGTGTTGGAGCACCGGCTTCTGTCAATGCAGGAGCACCTCCTGCGGAAGCTGCTTCCACGAATGTTGTTACCCCACATATGAAAACTCAAGATGTTGAGAGTAAAGAGGGACAAAAAGAAATTGAAGACAAGAATAGGAAAAAAGAAGCTGTAATGAAACGGGAAGCACGGACTGCGGAGGCTCTTTCAAAACGAAGTGCTGATAACCTCCGCTCCCCAATTTGTTGCATCATGGGTCATGTTGATACCGGTAAAACCAAGCTTCTAGATTGCATCCGAGGCACTAACGTTCAGGAGGGTGAGGCCGGAGGCATTACACAACAGATTGGTGCGACCTATTTCCCTGCTGAGAACATAAGGGAGAGAACCAAGGAGCTAAAAGCTGACGCAAAGTTGCGGGTCCCTGGTCTTCTGGTCATTGATACCCCAGGGCATGAATCGTTCTCGAATTTACGTTCACGAGGTTCAGGTTTATGTGATATCGCAATTTTGGTTGTTGACATAATGCACGGGTTGGAACAGCAGACAATTGAGTCGCTCAATCTTTTGAAAATGCGGAATACAGAGTTCATAGTTGCGTTAAATAAGGTGGACAGATTATATGGTTGGAAGACTTGCCCCAACGCACCTATTGTGAAGGCTATGAAGCAGCAATCTAATGACGTACAGAATGAGTTCAAAATGAGGTTCACACAGATTGTCACACAGTTCAAGGAACAGGGTCTGAATACTGAATTGTACTACAAAAATAAAGAAATGGGAGAAACTTTCAGTATTGTCCCTACCAGTGCAATCAGTGGCGAAGGCATTCCGGATATGCTATTGTTATTAGTGCAGTGGACTCAGAAAACTATGGTGGAAAAGCTTATGTTTAGCAATGACGTGCAGTGCACGGTGCTGGAGGTTAAGGTTATTGAAGGCCTTGGGACAACCATTGATGTTGTATTAGTTAATGGTATGCTTCATGAGGGAGATCAAATAGTCGTTTGCGGCATGCAAGGGCCTATTGTTACCACAATCCGTGCTTTACTGACCCCTCATCCTATGAAAGAACTCCGAGTAAAGGGATCTTATCAGCATCATAAAGAGCTCAAGGCTGCACAGGGTATCAAGATCACAGCACAGGGCCTTGAACATGCCATTGCAGGCACTGGTCTATATGTGGTGGGACCTGAGGATGATGTAGAACACATCAAGGAAGCAGCGATGCAAGACATGAGGTCAGTCATGAGCAGGATTGACAAGAGTGGGGAGGGCGTGTGCGTGCAAGCGTCTACCCTTGGGTCATTGGAAGCATTGTTGGAGTTCTTGAAGAGCCCGGCCGTGAACATACCTGTCAGTGGTATAGGCATAGGCCCTGTGCACAAGAGGGATGTCACGAGGGCCAGTGTCATGCTTGAGAGGAAAAAGGAATATGCCACCATCTTGGCGTTTGATGTCAAAGTGACACCCGAGGCTCGCGAGCTTGCAGATGAGACCGGTGTGAAGATATTTATCGCTGATATTATTTATCACTTGTTCGATCAGTTCAAGGCTTATATTGACAATCTCAAGGAAGAAAAGAAGAAGGAAGCTGCAGAGGAAGCAGTATTTCCATGTGTTCTCAAAATCATGCCAGACTGCGTTTTCAACAAGAAGGATCCCATTATCTTGGGGGTGGATGTTCTTGAAGGCATCGCTAAGGTTGGCACTCCAATTTGTATTCCTTCGAGGGATTTTATTGATATTGGAAGGCTTGCATCCATCGAAATTAACCACAAACAGGTTGATACAGCCAAGAAAGGCCAGAAGGTGGCCATAAAGATAGCTAGTTCCAATGCTGAGGAGCAGCAAAAGATGTATGGCAGGCATTTTGAGATTGAGGATGAGCTTGTTAGCCACATCACAAGGAAGTCTATAGATGTATTAAAAGCTAATTATCGGTATGATCTGTCTAACGAGGAGTGGAAGCTGGTCGTGAAGTTGAAGAATCTATTCAAGATACAATAA 4182 0.4627 MVRKKPTARDDDNPAVGGAKSKKKGRAIDDDEYSVGTELSEDQPQQDNEEESLPASGKKKGKKGSSKAAQHREEDQDSTVEAEEGDAPPIVFSGKKKSKTKKSGNSLFSASTFGALEEEDNDEEPPPSVGEEADEYKEIDDGDEGEDGSVVTFSGKKKSSKSSKKSNSLFTTSAFDAILDEGDGDGNDNVELEQRSTDENEDAPVIAFTGKKKSSKKSSSLFAASSFDGLDEGDDGKDENKTEEEDAPVITFSGKKKSSKSSKTSSSLFTAALLDEEDGNDVSVSEQQPTMKSGDDTIDDNREENEDPLTIAFSGKKKSSKSKKNNSLISASGFDTNLGDEAADVTEPEEPSVRGISNEADGKYAIDATVNKQGNEDVVETSKNKKKKKKSGRTVQEEEDLDKILAELGEGLTHSNTAPAPQEEKVQVQPEPVGPVDAKGEEKEAEAEAEGGESAAAKKKKKKKEKEKEKKAAAAAAAAVVEVKEEKQKETKNKVSDKKVPKHVREMQEALERRKEAEERKKREEEERLKKEEEERRRQEELERLAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRNQFLAQSGVLPTADIGSVTTKRPKYQTKKAKPAPIQANGEASVEVVENIEATENQQDTVPMVDALEVEKVEEVESTVGEAEQKLEAEHGVEENGIEEEDDDEDEWDAKSWDDAVVNLPVKSAFAEEEEEEEAESEPVLVAKKETKRVGAPASVNAGAPPAEAASTNVVTPHMKTQDVESKEGQKEIEDKNRKKEAVMKREARTAEALSKRSADNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLRVPGLLVIDTPGHESFSNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCPNAPIVKAMKQQSNDVQNEFKMRFTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMVEKLMFSNDVQCTVLEVKVIEGLGTTIDVVLVNGMLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGSYQHHKELKAAQGIKITAQGLEHAIAGTGLYVVGPEDDVEHIKEAAMQDMRSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGIGIGPVHKRDVTRASVMLERKKEYATILAFDVKVTPEARELADETGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKIMPDCVFNKKDPIILGVDVLEGIAKVGTPICIPSRDFIDIGRLASIEINHKQVDTAKKGQKVAIKIASSNAEEQQKMYGRHFEIEDELVSHITRKSIDVLKANYRYDLSNEEWKLVVKLKNLFKIQ* 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 677 691 - -
Eupl13g00621 1393 CDD IF2_aeIF5B_IV 1264 1359 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 391 407 - -
Eupl13g00621 1393 FunFam eukaryotic translation initiation factor 5B 1024 1143 - -
Eupl13g00621 1393 Coils Coil 1238 1258 - -
Eupl13g00621 1393 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 801 1017 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 Coils Coil 500 571 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 482 577 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 116 147 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 1 33 - -
Eupl13g00621 1393 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 488 1390 IPR015760 -
Eupl13g00621 1393 Gene3D Translation factors 1256 1393 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 657 676 - -
Eupl13g00621 1393 FunFam Eukaryotic translation initiation factor 5B 795 1023 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 436 460 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 657 691 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 293 311 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 230 251 - -
Eupl13g00621 1393 FunFam Eukaryotic translation initiation factor 5B 1143 1249 - -
Eupl13g00621 1393 Coils Coil 456 477 - -
Eupl13g00621 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1092 IPR027417 -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 760 795 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 254 271 - -
Eupl13g00621 1393 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1126 1255 IPR036925 -
Eupl13g00621 1393 FunFam Eukaryotic translation initiation factor 5B 1256 1393 - -
Eupl13g00621 1393 NCBIfam small GTP-binding protein domain 806 930 IPR005225 GO:0005525
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 736 795 - -
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 606 627 - -
Eupl13g00621 1393 Pfam Elongation factor Tu GTP binding domain 805 1013 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 MobiDBLite consensus disorder prediction 1 577 - -
Eupl13g00621 1393 CDD aeIF5B_II 1026 1134 - -
Eupl13g00621 1393 Gene3D - 795 1023 IPR027417 -
Eupl13g00621 1393 PRINTS GTP-binding elongation factor signature 885 896 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 PRINTS GTP-binding elongation factor signature 921 930 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 PRINTS GTP-binding elongation factor signature 805 818 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 PRINTS GTP-binding elongation factor signature 869 879 IPR000795 GO:0003924|GO:0005525
Eupl13g00621 1393 Gene3D - 1145 1249 IPR036925 -
Eupl13g00621 1393 Pfam Elongation factor Tu domain 2 1040 1115 IPR004161 GO:0005525
Eupl13g00621 1393 CDD IF2_eIF5B 804 1014 - -
Eupl13g00621 1393 Gene3D Translation factors 1024 1144 - -
Eupl13g00621 1393 SUPERFAMILY Translation proteins 1260 1392 IPR009000 -
Eupl13g00621 1393 Pfam Translation-initiation factor 2 1129 1242 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00621 Eupl-Chr13 9050736 9063788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00621 199 1393 Eukaryotic Initiation Factors Gene Family AT1G76810 62.827 0.0 1188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00621 K03243 - ming:122092410 1563.9