Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00615 ATGCAAGGGCAAAGAAGCACCATCGATTCCTTCCCTGAAACATTTGAATGTGACCATGGATCTAGTACAAGTAATAGTGGTGTGGATCGGCAACTTTTTTGGGGTGACATGCTAAATCCAGTAGAAAGTCGCTTACCAGACTTTCTACTATCTCCAAGTGATACAAATATCACATATGCAAATGCCGTTAGTCGTGATGGGAGGAGTTTGAGCGGCTGGAGTTTAGGTGAATCTAGCTCTAGCGACAACACAAGAAACCAGACCACCCATGATGAAGCCAAAATGGATCATGGATGGTCGTCTTCCTTGACTACTCATGCTGGACCTGGTCCCAGGTTGGATGAAAGGCGATATGAACCAACTATACTTTCTTTAGAAAGTGTTAATATAAACCTCAATCAGGTTGCAAATGGGCCATTATTTTTGCAAAATTCCAGTTCTGATGGTATCTCGCAGAACTTAAACTTAAATGCCGGATATGCAGGCAACAATGACAATGGTGTTCAGGTTGTGGAAGCAGGTATATGTCATCCGTATAAGCCTGGTGGATCTGAAACTGAGCATATTCCTTCTGCTGGTGGTTCTGCTGATCCTTTTGGAACTGCTTCTGGAAGTACTGGGTATTTGACTGAAGAGAGTGATGGTAGACCAGGTTCATTGGATGGTCGACGCTTATCCTGCAAAAGAAAGGCCCTTGAAGGAGTTTCTGGGCAGTTGTCTTTAGGTGGAAGTCCAAGCTGCTTTCAGCGAGCTGAAAACAGTGTATGGCATGCTGTTCCTGCTCGTTACAATGCTTCCAGTAGCTCAAGCATCCCTATCCCGACAGAAAACCCTTTTGCTGTTAATCCTCCAGAACTGTTGAATCCACAATTTGGGGTTGGTATGGGAGGAGTAGCTTCTGATAGCCATCCTGCTTTAAGTGTAGCAGGAAATGCAGAGAGCTCCCAGAGAAATTTCCGTATGAGAGTCAATCCTGCGCATCATCAAGATTCAGCCCCAACTAATCTATCGTCAACTGGGAATGCCATAAGGCGTTCTCATATTTGGTCACCCTATCAATCGTCTTCTAGAATTCATCCATTTAATCAACCTATGGATTTGAGGCCGACAGCAACCAATACAACTTCTCAGAGTCAGTCTCACACAATGCATATTCCCAGTTTGCCCCGAAACGTGCACCCTTTCCCATGGAGTGGCGCTTCAAATGCAAGGGTTGGCGGTTCGTCAAGTTCTCCTGTCATTCCTGGAGAGAGAACTACGTTACGAGAGGATGTAAACTCAAGAAGCATGCCAAGAAATATTTCAGAACATCCTATGTTTGTACCAGCAACTGAGATGAGAAATTTGGCACAAGATCCAACAAATTGGAGTTTAGCTAATGGAAATATAAGCATTCCTGGGAATGTTGCTTCTACTTCTCGAGTTGGATCTAGTTCAGTGGTTCATCGATCCCCTGCTCCTAATTGGGTACCTCCCCGCAATCCTCCGACCCAGTATCCACGAAGGTTATCAGAAGTTGTCCGTCGGTCATTGTTTTCGTCGGCTGGCTCTGAGACCGGGGGGCAGAGTAGTAATTTCACTCCACTACGTTCAGGTCCTTCTGCTTCTGCACAAGAAATGGTTCTTTCATCTGCAGGCGGTCACCAGGGACATCATCAGCCTTATCCAAGGTCAGCACTCTGGATGGACAGGCAAGGGGATGGTGTTCTTGGACTTCCCTTGTCAGTTCGAACTTTGGCTGCTGCCAGTGAAGGGAGAAGCAGGCTACTATCTGAGATTCGCAATGTATTGGATTTTGTGCGTAGGGGTGGTGATGGCTTAAGATTTGAGGATGTTCTTATTCTTGACCAGTCGGTACTTTTTGGGGTGACGGACTTGCATGATAGGCACAGAGATATGCGACTTGATGTTGACAACATGTCTTACGAGGAATTGTTGGCATTGGAAGAGCGCATAGGAAACGTGAGCACTGGGTTGAGTGAGGAAACTATATTAAAGTGTCTGAAGCATCGAAAATATATATCCTTCACAATAGGAGCTCCATCAGAGGTTGAACCATGCTGTATCTGTCAGGAGGAATATGTTGAAGGGGAGGATCTTGGGACGTTGGATTGTGGGCATGACTTCCACACTGACTGCGTCAAACAATGGCTAACACACAAGAATCTGTGTCCCATTTGTAAAACGACGGCCTTGGTTACGTGA 2205 0.4567 MQGQRSTIDSFPETFECDHGSSTSNSGVDRQLFWGDMLNPVESRLPDFLLSPSDTNITYANAVSRDGRSLSGWSLGESSSSDNTRNQTTHDEAKMDHGWSSSLTTHAGPGPRLDERRYEPTILSLESVNINLNQVANGPLFLQNSSSDGISQNLNLNAGYAGNNDNGVQVVEAGICHPYKPGGSETEHIPSAGGSADPFGTASGSTGYLTEESDGRPGSLDGRRLSCKRKALEGVSGQLSLGGSPSCFQRAENSVWHAVPARYNASSSSSIPIPTENPFAVNPPELLNPQFGVGMGGVASDSHPALSVAGNAESSQRNFRMRVNPAHHQDSAPTNLSSTGNAIRRSHIWSPYQSSSRIHPFNQPMDLRPTATNTTSQSQSHTMHIPSLPRNVHPFPWSGASNARVGGSSSSPVIPGERTTLREDVNSRSMPRNISEHPMFVPATEMRNLAQDPTNWSLANGNISIPGNVASTSRVGSSSVVHRSPAPNWVPPRNPPTQYPRRLSEVVRRSLFSSAGSETGGQSSNFTPLRSGPSASAQEMVLSSAGGHQGHHQPYPRSALWMDRQGDGVLGLPLSVRTLAAASEGRSRLLSEIRNVLDFVRRGGDGLRFEDVLILDQSVLFGVTDLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKCLKHRKYISFTIGAPSEVEPCCICQEEYVEGEDLGTLDCGHDFHTDCVKQWLTHKNLCPICKTTALVT* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00615 734 MobiDBLite consensus disorder prediction 198 212 - -
Eupl13g00615 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 732 IPR013083 -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 181 222 - -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 70 86 - -
Eupl13g00615 734 ProSiteProfiles Zinc finger RING-type profile. 687 728 IPR001841 -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 513 538 - -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 354 386 - -
Eupl13g00615 734 FunFam E3 ubiquitin-protein ligase MBR2 654 732 - -
Eupl13g00615 734 Pfam Ring finger domain 687 728 IPR001841 -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 70 115 - -
Eupl13g00615 734 SUPERFAMILY RING/U-box 686 731 - -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 1 26 - -
Eupl13g00615 734 SMART ring_2 687 727 IPR001841 -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 478 500 - -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 354 420 - -
Eupl13g00615 734 MobiDBLite consensus disorder prediction 402 416 - -
Eupl13g00615 734 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 223 732 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00615 Eupl-Chr13 8979790 8997171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00615 20 734 C3H Transcription Factor Family AT2G15530 36.301 1.86e-112 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00615 - - nnu:104601742 966.452