Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00614 ATGGCTGAGATGTACGATACCTCCTGCTCTTCCCACCTCCCTTCTCGTTCGGCCCTTGAAGCCGACGATATCTCCCTTTTTCTTCAACATCTCCTCCACTCATCATCCTCTTCTTCTTCTTCTTCTTGCATCTCGGAAAGGCCCAAACACATGCCCTTCTCAGCTCCACCACCTCAACCTTCCCCTCTGTTCTCTCTGTCCCCACAATTCAAGACTCTCCCGGATGATCAACACCGTCGATACCGATCAACTCCTCTTTCCGACTCGGACTGCCGAGTCAGGGACGGTACCTCTGCCTCCACGCCCGAGTCATCCGCCGCTCTCGACTCGTCTGCTTTGATCCTTTCGTCTTCCGGCATTTATTTTCCAGCCGAGATGAAAGATACGGGAATTGCGTCTTCTGTTGGGACTGGAGGAGATTGCGATGCCGTAACGGTTTCGGCCAAGAGAAGAAAACTCCTGGCAGAGAACGATTTCGATGACTACGATTGCGAAAGCGAGGAAGGTCTTGAGGTGTCTGAGGGGCCGTCGAAGTCGGTTCCTCCCCATACTTCTTCGAAGCGAAGCCGAGCGGCCGAAGTTCATAATTTGTCCGAAAAGAGGAGGAGGAGTAGGATCAACGAGAAAATGAAAGCCTTGCAGAGTCTCATTCCCAATTCTAACAAGACGGATAAGGCTTCGATGTTGGATGAAGCCATTGAGTATCTCAAGCAGCTTCAACTTCAAGTTCAAATGTTGTCAATGAGGAATGGGATGAGTTTGCATGCTTCGTACCTGCCTGGAGTACTGCAGCCTCTGCAGCTGCCTCAAATGCAGACGGGCATCTGCGAGGGAAATGGATTGCCGCTGCATATGAATGTGGGAACGAGCACACTGCCTGTGAACCAAGAATCTTCGACTCGAACTTCGTTCGGTCTGTCCAATCAATGCACAACCTCGCACCAGGCAATAGTCATAGATAGTATAAGAAGTATCACCAATGCAGAGACATCATTTGGGTTGGATTCACCAATTCAGGTTCCCCAAGGACCCTTTCAGCTGTCCACAGCTTCTGAGGAAATATACAGGGAAGACGTATTACCTCAACAGCAATTAGATACAGGTCACTCAGCAAGGAACCCATCAGCATCTCGGCCTTTTGATGCACGAGCATCGGTTCTAGAGAACATCAACGGTGTGGAACCATGTGTTTTGCACAGAAAAAGACCAGAAGACATGCTTTCAAAGGATGTAGATGGGAACCAATTTCTCATTCAGTATCTGCATGGGCAAGAGATGTATCACAAACCAGACAGGAAGAAGTTTGCCCAATGA 1314 0.4932 MAEMYDTSCSSHLPSRSALEADDISLFLQHLLHSSSSSSSSSCISERPKHMPFSAPPPQPSPLFSLSPQFKTLPDDQHRRYRSTPLSDSDCRVRDGTSASTPESSAALDSSALILSSSGIYFPAEMKDTGIASSVGTGGDCDAVTVSAKRRKLLAENDFDDYDCESEEGLEVSEGPSKSVPPHTSSKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGMSLHASYLPGVLQPLQLPQMQTGICEGNGLPLHMNVGTSTLPVNQESSTRTSFGLSNQCTTSHQAIVIDSIRSITNAETSFGLDSPIQVPQGPFQLSTASEEIYREDVLPQQQLDTGHSARNPSASRPFDARASVLENINGVEPCVLHRKRPEDMLSKDVDGNQFLIQYLHGQEMYHKPDRKKFAQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00614 437 MobiDBLite consensus disorder prediction 73 89 - -
Eupl13g00614 437 FunFam Basic helix-loop-helix transcription factor 185 248 - -
Eupl13g00614 437 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 361 IPR031066 -
Eupl13g00614 437 MobiDBLite consensus disorder prediction 90 107 - -
Eupl13g00614 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 251 IPR036638 GO:0046983
Eupl13g00614 437 Pfam Helix-loop-helix DNA-binding domain 194 240 IPR011598 GO:0046983
Eupl13g00614 437 Gene3D - 185 250 IPR036638 GO:0046983
Eupl13g00614 437 SMART finulus 196 245 IPR011598 GO:0046983
Eupl13g00614 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Eupl13g00614 437 MobiDBLite consensus disorder prediction 36 107 - -
Eupl13g00614 437 MobiDBLite consensus disorder prediction 188 202 - -
Eupl13g00614 437 MobiDBLite consensus disorder prediction 165 202 - -
Eupl13g00614 437 CDD bHLH_AtPIF_like 190 252 IPR047265 -
Eupl13g00614 437 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00614 Eupl-Chr13 8963093 8975239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00614 157 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 48.750 4.87e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00614 HLH 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00614 - - nnu:104606624 397.512