Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00613 ATGTCCGAAGAGGGAGGCCATGGCAACTTGTTGCTGGAAAACAATTCATGGGTTTTTCCCACTTCGGATAATTCAGGTGGTAGTGAAGAAAAATCTGGAAAAAACCCGCCTGATTCGAGCTCAAATAGCCCGACTGCAACGACAAGGGCGACAACATCGGTGGGTGGTCAGAAGCGAAGTCGAAAAGGGGTTCAGAAAATTGGAAAGGGTGGTGGTGAGTGGAATGACGGTAAAGGTGGTGGTGAATCAGACCATGAGATACACATATGGACGGAGAGAGAGAGGAGGAAGAAGATGAGGAACATGTTCTCTAATCTTCATGCTTTGCTTCCTCACCTCCCTGCCAAGGCCGACAAATCAACGATCGTTGATGAAGCAGTGAATTACATCAAAACCCTTCAAGGCTCACTTCAGAAGCTACAGAAACAAAGGCTAGAAATGCTCCGAGGGACGATAATTATTGACTGTGAACCATCGATAGCGGCACCAACAACACGAGCATTAGACTCTCGAGAGGCATTTTTTGCTGATCAGGGATCTTCCAGGAACTTGGCAATGACGACGACCGCCACAACGAACTCACCCCACTCCCTCTTGGTCCCTCACTTGCCTTCTTGCTTTCAGACATGGTCTTCACCCAATGTTGTCTTGAATGTGTGTAGCGACGACGCGCAAATTAGTGTGTGTGCACCAAGGAAACCAGGGATCTTATCTACACTCTTCTATGTATTAGAGAAGCATAAACTGGAAGTCGTAACTGCTCACATTTCCTCAGATTATTACACCAGCATGTACATGATCCATGCCCATGCAAGTGGAGCTTCTGATCAATTTCCAGAGGCATTGCCAGTGGAGGAAATATACAAGTTGGCAGTTGGAGAGATGATGTTCTGGCTCTCTACCTGA 906 0.4702 MSEEGGHGNLLLENNSWVFPTSDNSGGSEEKSGKNPPDSSSNSPTATTRATTSVGGQKRSRKGVQKIGKGGGEWNDGKGGGESDHEIHIWTERERRKKMRNMFSNLHALLPHLPAKADKSTIVDEAVNYIKTLQGSLQKLQKQRLEMLRGTIIIDCEPSIAAPTTRALDSREAFFADQGSSRNLAMTTTATTNSPHSLLVPHLPSCFQTWSSPNVVLNVCSDDAQISVCAPRKPGILSTLFYVLEKHKLEVVTAHISSDYYTSMYMIHAHASGASDQFPEALPVEEIYKLAVGEMMFWLST* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00613 301 CDD bHLH_AtbHLH_like 88 141 IPR045239 -
Eupl13g00613 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 133 IPR011598 GO:0046983
Eupl13g00613 301 Coils Coil 123 143 - -
Eupl13g00613 301 SMART finulus 91 139 IPR011598 GO:0046983
Eupl13g00613 301 MobiDBLite consensus disorder prediction 14 59 - -
Eupl13g00613 301 MobiDBLite consensus disorder prediction 1 86 - -
Eupl13g00613 301 Pfam Helix-loop-helix DNA-binding domain 91 134 IPR011598 GO:0046983
Eupl13g00613 301 Gene3D - 82 152 IPR036638 GO:0046983
Eupl13g00613 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 145 IPR036638 GO:0046983
Eupl13g00613 301 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 24 299 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00613 Eupl-Chr13 8954486 8957123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00613 17 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.380 8.96e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00613 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00613 - - nnu:104601904 376.326