Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00612 ATGCGTGGAAGTTTAGAGCCATTAGACACAGGGGTTCAGATCCCATACTACTTCAGGTGTCCAATATCGTTAGAGCTTATGCGAGATCCGGTTACGGTTAGCACCGGCCAAACCTACGACCGAGCCAGTATCGAGTCCTGGGTCGCAACCGGCAACACCACTTGCCCCGTCACCCGCGCACAGCTTTTCGACATCACTCTCATTCCTAACCACACCCTCCGCCGTCTCATCCAGGACTGGTGTGTCGCTAATAGATCCCTCGGTGTCGAGCGCATCCCCACACCGAAGCAACCCGCTGACCCGGCTTTGATCCGCTCACTACTCAACCAGGCCTCCTCCGTGTCTATTCCTCCCGAGTCGCGCCTCTCTGCCCTCCGCCGAATCAGAGGTCTCGCTAGAGACTCAGACAAGAACCGTTCTCTCATCTCCGCGCAAAACGCTCGACATACTCTCCTCTCTATTGTCTTCTCCAACACAGAAACCGAATCGAACGAGCTGACTCACGAGTCGCTTGCTCTGCTTGTAATGTTCCCGCTCACCGAGTCAGAGTGCGAGTCTGAAGCTTCTCAACCAGACCGAGTTGCCTTCCTAGTTTCCCTCCTCTTCCACTACTCTATCGAAGTCCGCGTCAACGCTGCAGCGCTTATTGAAGGCGTCGTCGCCGGGACTCGATCGTTGGAGCTACGGATCCTCATTGGTAATGCTGATGGGATATTCGAAGGAATAACAAGAATCCTAAACGATCCACTTACTTATCCAAGAGCGCTAAAGGTTAGCATTAAAGCCTTATTCGCCTTGTGCCTGATTAAGCAGAACCGACACAAAGCTGTGTCGGCTGGAGCGGCCGAAGCGCTTATAAATCGATTGGCCGATTTCGAGAAATGCGATGCGGAGCGCGCTCTGGCTACTATCGAATTGCTATGCCGGATCCCGGCAGGTTGCGCAGCATTTGCTTCGCACGCGCTTATAGTCCCTCTTCTAGTGAAGATTGTACTGAAGATATCAGACCGTGCGACGGAGTACGCAGCGGGAGCTCTGCTGTCACTCTGCTCTGCATCAGAGCAGTTACAAGGAGATGCGGTGGAGGCCGGGGTAGTTACGCAGCTGTTGCTACTTGTACAGAGCGGTTGCTCCGAGCGAGCAAAACGTAAGGCGCAACTACTGCTTAAGCTACTTCGGGATTCTTGGCCGGACGATTCAATTGCCAATTATTCTGACGATTTTTGTTGCAGTGATGTCGTCCCATTTTGA 1251 0.5324 MRGSLEPLDTGVQIPYYFRCPISLELMRDPVTVSTGQTYDRASIESWVATGNTTCPVTRAQLFDITLIPNHTLRRLIQDWCVANRSLGVERIPTPKQPADPALIRSLLNQASSVSIPPESRLSALRRIRGLARDSDKNRSLISAQNARHTLLSIVFSNTETESNELTHESLALLVMFPLTESECESEASQPDRVAFLVSLLFHYSIEVRVNAAALIEGVVAGTRSLELRILIGNADGIFEGITRILNDPLTYPRALKVSIKALFALCLIKQNRHKAVSAGAAEALINRLADFEKCDAERALATIELLCRIPAGCAAFASHALIVPLLVKIVLKISDRATEYAAGALLSLCSASEQLQGDAVEAGVVTQLLLLVQSGCSERAKRKAQLLLKLLRDSWPDDSIANYSDDFCCSDVVPF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00612 416 Gene3D - 86 405 IPR011989 -
Eupl13g00612 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 85 IPR013083 -
Eupl13g00612 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Eupl13g00612 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Eupl13g00612 416 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Eupl13g00612 416 SUPERFAMILY ARM repeat 104 393 IPR016024 -
Eupl13g00612 416 CDD RING-Ubox_PUB 15 67 IPR045210 -
Eupl13g00612 416 SUPERFAMILY RING/U-box 11 88 - -
Eupl13g00612 416 PANTHER WDSAM1 PROTEIN 12 398 IPR045185 GO:0061630
Eupl13g00612 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00612 Eupl-Chr13 8948607 8950232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00612 1 416 U-box Gene Family AT1G49780 65.877 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00612 - - nnu:104606615 649.432