Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00594 ATGGATGTAGACCTCCTAAAGTCTTCATCACCAGAAGATCATCAGATGGATATGATGATGATGATGATGCAGATGGACAAGCTACAAGAATTCTGTGGACCCTACCCCGACGTTACTGAATTCCCGTCAATTCATGAGTTCTCTGATCATGGCACTACTTTCACACAACCCATCTTCGATAACCCAAATCTAACTTCTCCTACATTCATCAATAATCCTCCTTCCTCCATTTCATTTATGAACACCACGGTTCAAGAACCGGTTGCACCGGCGATTTTGTCGGGTGCAAGTGCAACGCAGAAGCGGAACTCAATGGCGGCAATGAGGGAGATGATCTTTCGGATTGCTGCGATGCAACCAATTCACATAGACCCGGAAACTGTGAAGCCACCAAAGAGGAGGAATGTGAAGATATCGAAGGACCCACAAAGTGTAGCAGCGAGACACAGGAGGGAGAGGATAAGTGAGAGGATAAGGATTTTGCAGAGACTTGTTCCTGGAGGTACTAAGATGGATACGGCATCGATGTTGGATGAAGCAATTCACTATGTGAAATTTTTGAAGACGCAGGTGCAATCACTGGAGCGAGCTGCAGCTAACAGGCCTACTGGGGTTGGATACCCAGTGGGGATTTCTAATTCTAACCCGAATTATTCTTCATTTGGAAAAGGTTACCAACCTGGTCAAGTGTTTAGCCCGACGTCCCAGATGCTTAGCTGA 720 0.4611 MDVDLLKSSSPEDHQMDMMMMMMQMDKLQEFCGPYPDVTEFPSIHEFSDHGTTFTQPIFDNPNLTSPTFINNPPSSISFMNTTVQEPVAPAILSGASATQKRNSMAAMREMIFRIAAMQPIHIDPETVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPTGVGYPVGISNSNPNYSSFGKGYQPGQVFSPTSQMLS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00594 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 197 IPR036638 GO:0046983
Eupl13g00594 239 CDD bHLH_AtIND_like 139 195 - -
Eupl13g00594 239 Pfam Helix-loop-helix DNA-binding domain 147 187 IPR011598 GO:0046983
Eupl13g00594 239 Gene3D - 137 203 IPR036638 GO:0046983
Eupl13g00594 239 FunFam BHLH transcription factor 141 204 - -
Eupl13g00594 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 218 IPR045843 GO:0003700|GO:0006355
Eupl13g00594 239 SMART finulus 144 193 IPR011598 GO:0046983
Eupl13g00594 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00594 Eupl-Chr13 8732819 8733658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00594 25 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 59.893 5.14e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00594 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00594 - - vvi:100247090 280.411