LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g00592	ATGGAGAATAAGCTCGTGGTTCTTGGTATCCCGTGGGACGTCGATACCGATGGTTTGAGAGAGTATATGAGCAAGTTTGGGGAGTTGGAAGACGTTATTGTGATGAAGGAGCGTTCCACTGGTCGGTCTCGCGGTTTTGGCTATGTAACATTTGCGTCAGCTGAGGATGCAAAGAATGCACTTGCAAGTGAGCACCTTCTAGGCAGCAGAGTTCTGGAAGTAAAAGTAGCGACACCAAGGGAAGAGATGAGAACACCTGCGAAGAAAATAACCCGGATATTTGTAGCCAGAATCCCACAATCTGTCACAGAAGCAGAATTCCGAACTTATTTTGAGACCTATGGTGAGATAATGGATTTGTACATGCCAAAGGATCAAGGCTCCAAAGGGCATCGTGGAATTGGGTTTATCACTTTCGAAAGTGCAGACTCTGTAGATACCTTGATGGCAGAAACTCATGAATTGGGAGGTTCTACTATAGTTGTGGACCGCGCGACACCAAAGGATGAGGACTCGAGACCTAGCAGAGTAACACAAGGTGGGTACGGTGCATACAATGCTTATATTACAGCAGCAACTAGATATGCGGCACTAGGTGCTCCTACACTGTATGACCATCCAAGCTCAGGTTATGGAAGAGGGGTCTTTGAACCAACTCGAGGAATGGGCAAAAAGATCTTTGTTGGCAGGCTTCCACAGGAGGCAAGCGCTGACGATCTTCGCCACTATTTTGGCAGATTTGGCCGTATTTTAGATGTTTACATTCCCAAGGACCCAAAGAGAACTGGCCATCGGGGATTTGGCTTTGTAACTTTTGCTGAGGATGGTGTGGCAGAGCGTGTATCTCGAAGATCTCATGAGATCTGTGGACAGCAGGTTGCCATAGATTCGGCTGCACCACTTGATGACGCTGGTACAAGTGGAAACTACATGATGGAGAACGCCGAACCATATGGGGGGTATGGTGGTCCTATGCGTGCTTATGGCCGGATGTATGGGAGTCTGGATTTTGATGATTGGGGTCATGGCAGCAGCGGTAGTGGCAGCAGACCTTCGAGAATGGATTGGAGGTACAGGCCATACTAG	1086	0.4816	MENKLVVLGIPWDVDTDGLREYMSKFGELEDVIVMKERSTGRSRGFGYVTFASAEDAKNALASEHLLGSRVLEVKVATPREEMRTPAKKITRIFVARIPQSVTEAEFRTYFETYGEIMDLYMPKDQGSKGHRGIGFITFESADSVDTLMAETHELGGSTIVVDRATPKDEDSRPSRVTQGGYGAYNAYITAATRYAALGAPTLYDHPSSGYGRGVFEPTRGMGKKIFVGRLPQEASADDLRHYFGRFGRILDVYIPKDPKRTGHRGFGFVTFAEDGVAERVSRRSHEICGQQVAIDSAAPLDDAGTSGNYMMENAEPYGGYGGPMRAYGRMYGSLDFDDWGHGSSGSGSRPSRMDWRYRPY*	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl13g00592	361	Gene3D	-	83	194	IPR012677	-
	Eupl13g00592	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	91	167	IPR000504	GO:0003723
	Eupl13g00592	361	FunFam	heterogeneous nuclear ribonucleoprotein 1	83	175	-	-
	Eupl13g00592	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	93	150	IPR000504	GO:0003723
	Eupl13g00592	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5	63	IPR000504	GO:0003723
	Eupl13g00592	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	226	281	IPR000504	GO:0003723
	Eupl13g00592	361	SUPERFAMILY	RNA-binding domain, RBD	223	323	IPR035979	GO:0003676
	Eupl13g00592	361	Gene3D	-	222	304	IPR012677	-
	Eupl13g00592	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	3	79	IPR000504	GO:0003723
	Eupl13g00592	361	SMART	rrm1_1	4	75	IPR000504	GO:0003723
	Eupl13g00592	361	SMART	rrm1_1	225	296	IPR000504	GO:0003723
	Eupl13g00592	361	SMART	rrm1_1	92	163	IPR000504	GO:0003723
	Eupl13g00592	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	224	300	IPR000504	GO:0003723
	Eupl13g00592	361	SUPERFAMILY	RNA-binding domain, RBD	89	184	IPR035979	GO:0003676
	Eupl13g00592	361	Gene3D	-	2	82	IPR012677	-
	Eupl13g00592	361	PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	223	318	-	-
	Eupl13g00592	361	FunFam	heterogeneous nuclear ribonucleoprotein 1	1	82	-	-
	Eupl13g00592	361	FunFam	RNA-binding family protein isoform 1	221	304	-	-
	Eupl13g00592	361	SUPERFAMILY	RNA-binding domain, RBD	3	84	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g00592	Eupl-Chr13	8675204	8701736	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g00592	5	273	Eukaryotic Initiation Factors Gene Family	AT2G36660	21.245	2.62e-09	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g00592	K14411		-	nnu:104601766	632.098