Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00580 ATGTCACATAGATGTGGGCCGGCGCCATTCTTGACGAAGACGTACCAGTTGGTGGAGGATAGGAGCACCGACGATGTGATTTCTTGGAACGATACCGGCGCTACTTTCGTGGTTTGGAAACCGGCGGATTTCGCGAGGGATTTGCTTCCCAATTCCTTCAAGCATAACAACTTCTCAAGTTTCGTGCGCCAACTTAACACCTATGGCTTTCGAAAGATTGTGCCGGACAGGTGGGAATTTGCGAACGATTTTTTCAAGCGAGGAGAAAAAGAGCTCCTCTGCGAAATCCAACGTAGAAAAACGGTCCCAATATCGACAGCTCAGATGCCTGCGGGTGGAAAATCCAACGGTATTCCTTCATCCCAATCAAATTCGGGCGAAGACCTAGGGTCCACCTCAACTTCCTCTCCCAACTCGAAAAACCACGGGTCGGAGGAGACGACGACCCACCTGTCCGATTTATCGGAAGAGAATGAGAAACTGAGAAAAGACAATCAAGTCCTCAGCTTAGAGCTCGCGCAGGCGAAGAAGCAATGCGAAGAGCTTGTAGCTTTCCTCTCCAAGTACGTCAACGTTACACCTGATCAGATATATTACATCATGATGCAAGGAGCCGGTGGGCCCACCCATGATCAATTGGTAGAGATCTGTCAAGAGGATGATGACGAAAAAGGAGACGTGGAGTGCTTGAAGCTGTTTGGGGTATTGTTGAAAGGGAAGAAGAGGGAGCGCGATGACAAGCGTGTTGTTGGTGGGCCCCCTTTGAAAGAGATGAAGATGATGGACTGCCACGCACCGTGGATGAAAATCTTTTCTTCCCCTTGCGACAGCACCAAGGTCTGCAACTGA 849 0.4971 MSHRCGPAPFLTKTYQLVEDRSTDDVISWNDTGATFVVWKPADFARDLLPNSFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDFFKRGEKELLCEIQRRKTVPISTAQMPAGGKSNGIPSSQSNSGEDLGSTSTSSPNSKNHGSEETTTHLSDLSEENEKLRKDNQVLSLELAQAKKQCEELVAFLSKYVNVTPDQIYYIMMQGAGGPTHDQLVEICQEDDDEKGDVECLKLFGVLLKGKKRERDDKRVVGGPPLKEMKMMDCHAPWMKIFSSPCDSTKVCN* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00580 282 MobiDBLite consensus disorder prediction 146 160 - -
Eupl13g00580 282 Coils Coil 144 178 - -
Eupl13g00580 282 Gene3D - 146 194 - -
Eupl13g00580 282 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 MobiDBLite consensus disorder prediction 104 160 - -
Eupl13g00580 282 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Eupl13g00580 282 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 195 IPR027725 -
Eupl13g00580 282 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 MobiDBLite consensus disorder prediction 104 145 - -
Eupl13g00580 282 FunFam Heat stress transcription factor B-4 2 100 - -
Eupl13g00580 282 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Eupl13g00580 282 Gene3D - 3 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00580 Eupl-Chr13 8505224 8508519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00580 2 282 HSF AT4G36990 52.397 1.02e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Eupl13g00580 HSF_DNA-bind 9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00580 K09419 - nnu:104606401 369.392