Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00575 ATGCAGAGATCCTCCAAAAGGCCCAAAACCCACGGAATTCAAACGATCCAGCCCTCTCCTTCGTTACGTCCGACCCAAGAACAGGAGAATTCAATCATTGTCGCCGCCCTCAAGTATGTCCTTTACGGGTGCACCAACGATGATGCCTACATTGCTGAACCATCCGGGCTATCTGCAACCAGTCAAAATGCCAGCACCTTTTCACCTGCCACTAGTAGCTCCAGCACTGATCAAGGATCCATGACTTTGTCCCTCCCTTATGGAGATACGTGTCAACTATGTAGATTTGACGGTTGTCTAGGGTGCAACTTTTTTGTGCCATCCCAAGGAGAGAATACGATGACGAAGAAGAAGAATTACCGGGGTGTTCGACAGAGGCCGTGGGGCAAATGGGTTGCTGAGATCAGGGACCCGAGAATTCCAGCTCGGAAATGGCTCGGAACCTTCGATACCGCTGAAGAAGCCGCTCGAGCATACGATAGGGAAGCCGTTAATTGTCGTGGGTCCCGGGCGAAACTCAACTTCCCGTTCCCTGATAACCCACCTAATCAAAATTTCCAAGACGAACAACAATTACAGCAGAATCAACAGCAACAGGAGGATGAGGAGGAACCAGTGCATTTTGACATGGCAAACGGAGACGGTGGCGATGGCAGCAGAAACCAGTAA 669 0.5037 MQRSSKRPKTHGIQTIQPSPSLRPTQEQENSIIVAALKYVLYGCTNDDAYIAEPSGLSATSQNASTFSPATSSSSTDQGSMTLSLPYGDTCQLCRFDGCLGCNFFVPSQGENTMTKKKNYRGVRQRPWGKWVAEIRDPRIPARKWLGTFDTAEEAARAYDREAVNCRGSRAKLNFPFPDNPPNQNFQDEQQLQQNQQQQEDEEEPVHFDMANGDGGDGSRNQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00575 222 MobiDBLite consensus disorder prediction 7 27 - -
Eupl13g00575 222 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Eupl13g00575 222 PANTHER DNA-BINDING DOMAIN 74 197 IPR044808 GO:0003700|GO:0009873
Eupl13g00575 222 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Eupl13g00575 222 MobiDBLite consensus disorder prediction 178 199 - -
Eupl13g00575 222 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Eupl13g00575 222 MobiDBLite consensus disorder prediction 1 27 - -
Eupl13g00575 222 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Eupl13g00575 222 MobiDBLite consensus disorder prediction 176 222 - -
Eupl13g00575 222 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Eupl13g00575 222 Pfam AP2 domain 119 161 IPR001471 GO:0003700|GO:0006355
Eupl13g00575 222 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Eupl13g00575 222 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Eupl13g00575 222 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00575 Eupl-Chr13 8428310 8429186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00575 27 179 AP2-EREBP Transcription Factor Family AT4G34410 42.553 4.47e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl13g00575 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00575 - - csin:114264032 154.451