Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00558 ATGGAAGAAGACGATGAGGTCTACTCAGTTTCTAACCCCAGCGACTCTGGCGACGAATACAACATAGACATCGAAGGAGATAGTGAAAACGATGACGACGAAGAACTATCTCTGCTCGATTCCCCTCCCTCCGATGAAGATCGAAAATCGCAGAATGTCGCTGCTCTCGTGAGAGGCAACCTCGTCGTGAGAAGGCAGCCGCTGCTTCCTCGAGTTCTTTCAGTATCAGATGCAGCAGCTGTGGCTAGAAAACCATTCAAACCTCCGTGCTCTAATGGGTACAGCGACCAGAAGGAAGAGCTTGGTCGTCGCCTCTGGGCTCGTAAGAGATTCGTTCCATGGGGTTCCTCAAGGCCGGCATTGGTCGCGGTAACCAACTATTTGAATATCCCTAGTGTTGTTGAGAAAGATGTTGCAGAGGAGAGTGTGTCTCTGCCACCTGGGGTTGAGCCTCTGCTGTTGTGGCAACCTGAAGAGTCTGGAAAGGAATGTGGGAAAACTACTCCGATAGTTGTAGATCCATTGCTTGTTCGTTTCCTTCGACCTCATCAAAGAGAAGGTGTTCAGTTTATGTTTGAATGTGTTTCTGGCTTGTCCAGTTCGGCTGGTATATCTGGATGTATTCTAGCCGATGATATGGGTTTAGGGAAGACGTTACAGTCGATCACATTGCTGTATACTCTTCTTCGCCAGGGATTTGACGGGAACTCAATGGTTAAAAAGGCAATCATTGTCACTCCTACTAGCCTTGTTAGTAATTGGGAGTCTGAAATTAAGAAGTGGATTGGAGAAAGGGTTCAGCTTATTGCTCTTTGTGAAAGCACCCGGGATGACGTTGTCTCTGGAATTGACACTTTCATAAGGCCTCAGAGCTGTTTTCAGGTGTTAATTGTTTCTTACGAGACATTCCGGATGCATTCATCAAAATTCGACAAAAGTGGATCCTGTGACCTCCTCATATGTGATGAGGCTCATCGGCTGAAGAACGATCAGACACTAACCAATCGGGCATTGGCTGCTCTTTCATGCAGTCGTCGCATTTTATTGTCAGGAACCCCAATGCAGAATGACCTAGAAGAGTTTTTTGCCATGGTTAACTTTACTAATCCAGGAGTCTTGGGGGATGCTGCATATTTTCGTCGGTACTATGAGGCACCGATCATTTGTGGAAGAGAACCTACAGCAACCGAAGAAGAGAGAAGGCTAGGTGTTGAGCGCTCTGCGGAACTAAGTTCCAAAGTAAATCAGTTTATACTGAGGAGGACAAATGCTTTGTTATCAAATCATTTACCCCCAAAGATAGTGGAAGTTGTTTGTTGCAAGTTGACCCCTCTCCAATCTGAATTGTATAACCATTTTATACATTCAAAAAATGTTAAACGAGTAATTGTCGAAGAGATGAAACAGTCAAAAATTTTGGCATATATTACAGCTCTTAAAAAGCTTTGCAATCATCCGAAGCTCATTTATGATACAATCAAAAGTGGGAGTCCAGGTACATCGGGGTTTGAGGACTGTATACGCTTTTTTCCACCAGAGATGTTTTCTGGAAGATCTGGATCATGGACTGGCGGCGATGGGGTTTGGGTTGAATTGTCTGGAAAAATGCATGTTTTAGCTCGATTACTGGCCCATCTGCGTCAGAAAACTAATGACCGAATTGTCCTTGTTTCAAACTACACTCAGACTCTAGACCTTTTTGCTCAATTGTGTCGTGAAAGAAGATATCCGCATTTGAGGCTTGATGGAACCACATCGATTAGTAAAAGACAAAAATTGGTCAACCGTTTTAATGACTTTTCAAAGGATGAGTTTATCTTTCTCTTAAGTAGCAAGGCTGGTGGGTGTGGGCTAAATTTGATAGGTGGAAATCGCCTTGTCCTATTTGATCCTGATTGGAACCCTGCCAATGACAAGCAAGCTGCTGCAAGAGTTTGGAGGGATGGGCAGAAGAAGAGAGTATACATCTATAGATTTTTGAGTACTGGAACAATCGAAGAAAAGGTATACCAACGTCAAATGTCAAAAGAAGGGCTTCAGAAAGTTATTCAGTCGGAGCAAACGGATAATCTTAAGACACAGGGGAACCTTCTTTCAACAGAAGACCTACGCGATCTTTTCACATTTCATGAGAATGCAAGGTCTGAAATTCATGAAAAGATGAACTGCATTCGCTGTAAAACTTGTGATTTAGAGGTCATGAATCCTGAGAATATAAGGGAGGTTGAAGATGGACCCAATCCAACAAATGAAAGTTGTCAGGTTGATCAAGGTGATATAGGTGGATTTGCAGAAATTTCTGGTACCTTGCATAAGTTGAAAAGCTCTGAGAAACAGCTCGGAAGTCCCCTTGAAGAGGATCTAGGAAGTTGGGGGCATCATTTTTCTCCAACATCAGTACCTGATGCAATTTTTCAAGCTTCAGCTGGTGATGAGGTCACATTTGTTTTCACAAACCAAGTAGATGGGAAGCTTATTCCTGTTGAATCAAATAGTTTAAAGCCTCAGAGGGTGGAAGGACATAAAGACCACTCTGATACAAGGGAAACCCAGAACCAGGGATCCTTGTTATTTTCGCAACGTCGTCCACGACTAACTTTTTCCATCTCTTCCAATAGAGATTCTACCAGGAGCATATCACCTGCCTCACACAAGCCTTTGCAAGGGGGATCTATGAAATTAACAAGAACGCCACTAAAAAGTATAATGCATGTACCAACAAAGCCTAGGACTTCTCGTGGTAATCAATTACCCCTCAAAAGATTGTCTACTGATTCCGAAGAGCATGATGATGATTTTATGTAA 2805 0.4317 MEEDDEVYSVSNPSDSGDEYNIDIEGDSENDDDEELSLLDSPPSDEDRKSQNVAALVRGNLVVRRQPLLPRVLSVSDAAAVARKPFKPPCSNGYSDQKEELGRRLWARKRFVPWGSSRPALVAVTNYLNIPSVVEKDVAEESVSLPPGVEPLLLWQPEESGKECGKTTPIVVDPLLVRFLRPHQREGVQFMFECVSGLSSSAGISGCILADDMGLGKTLQSITLLYTLLRQGFDGNSMVKKAIIVTPTSLVSNWESEIKKWIGERVQLIALCESTRDDVVSGIDTFIRPQSCFQVLIVSYETFRMHSSKFDKSGSCDLLICDEAHRLKNDQTLTNRALAALSCSRRILLSGTPMQNDLEEFFAMVNFTNPGVLGDAAYFRRYYEAPIICGREPTATEEERRLGVERSAELSSKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSELYNHFIHSKNVKRVIVEEMKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGFEDCIRFFPPEMFSGRSGSWTGGDGVWVELSGKMHVLARLLAHLRQKTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNRFNDFSKDEFIFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQSEQTDNLKTQGNLLSTEDLRDLFTFHENARSEIHEKMNCIRCKTCDLEVMNPENIREVEDGPNPTNESCQVDQGDIGGFAEISGTLHKLKSSEKQLGSPLEEDLGSWGHHFSPTSVPDAIFQASAGDEVTFVFTNQVDGKLIPVESNSLKPQRVEGHKDHSDTRETQNQGSLLFSQRRPRLTFSISSNRDSTRSISPASHKPLQGGSMKLTRTPLKSIMHVPTKPRTSRGNQLPLKRLSTDSEEHDDDFM* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00558 934 Pfam Helicase conserved C-terminal domain 540 648 IPR001650 -
Eupl13g00558 934 SMART ultradead3 176 383 IPR014001 -
Eupl13g00558 934 CDD SF2_C_SNF 532 660 - -
Eupl13g00558 934 PANTHER SNF2/RAD54 FAMILY MEMBER 67 829 - -
Eupl13g00558 934 MobiDBLite consensus disorder prediction 20 40 - -
Eupl13g00558 934 Gene3D - 155 420 IPR038718 -
Eupl13g00558 934 SMART helicmild6 565 649 IPR001650 -
Eupl13g00558 934 MobiDBLite consensus disorder prediction 828 934 - -
Eupl13g00558 934 FunFam Predicted protein 443 517 - -
Eupl13g00558 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 421 IPR027417 -
Eupl13g00558 934 MobiDBLite consensus disorder prediction 1 51 - -
Eupl13g00558 934 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 371 IPR014001 -
Eupl13g00558 934 MobiDBLite consensus disorder prediction 850 885 - -
Eupl13g00558 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 736 IPR027417 -
Eupl13g00558 934 CDD DEXHc_RAD54 180 421 - -
Eupl13g00558 934 FunFam DNA repair and recombination protein RAD54 151 420 - -
Eupl13g00558 934 MobiDBLite consensus disorder prediction 835 849 - -
Eupl13g00558 934 Pfam SNF2-related domain 183 489 IPR000330 GO:0005524|GO:0140658
Eupl13g00558 934 Gene3D - 421 729 IPR027417 -
Eupl13g00558 934 Gene3D - 443 712 - -
Eupl13g00558 934 FunFam DNA repair and recombination protein RAD54-like 526 701 - -
Eupl13g00558 934 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 699 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00558 Eupl-Chr13 8225484 8254500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00558 529 707 RAD5 or RAD16-like Gene Family AT5G43530 36.111 1.22e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl13g00558 SNF2_N 9.7e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00558 K10875 - nnu:104606018 1483.77