Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl13g00558 | ATGGAAGAAGACGATGAGGTCTACTCAGTTTCTAACCCCAGCGACTCTGGCGACGAATACAACATAGACATCGAAGGAGATAGTGAAAACGATGACGACGAAGAACTATCTCTGCTCGATTCCCCTCCCTCCGATGAAGATCGAAAATCGCAGAATGTCGCTGCTCTCGTGAGAGGCAACCTCGTCGTGAGAAGGCAGCCGCTGCTTCCTCGAGTTCTTTCAGTATCAGATGCAGCAGCTGTGGCTAGAAAACCATTCAAACCTCCGTGCTCTAATGGGTACAGCGACCAGAAGGAAGAGCTTGGTCGTCGCCTCTGGGCTCGTAAGAGATTCGTTCCATGGGGTTCCTCAAGGCCGGCATTGGTCGCGGTAACCAACTATTTGAATATCCCTAGTGTTGTTGAGAAAGATGTTGCAGAGGAGAGTGTGTCTCTGCCACCTGGGGTTGAGCCTCTGCTGTTGTGGCAACCTGAAGAGTCTGGAAAGGAATGTGGGAAAACTACTCCGATAGTTGTAGATCCATTGCTTGTTCGTTTCCTTCGACCTCATCAAAGAGAAGGTGTTCAGTTTATGTTTGAATGTGTTTCTGGCTTGTCCAGTTCGGCTGGTATATCTGGATGTATTCTAGCCGATGATATGGGTTTAGGGAAGACGTTACAGTCGATCACATTGCTGTATACTCTTCTTCGCCAGGGATTTGACGGGAACTCAATGGTTAAAAAGGCAATCATTGTCACTCCTACTAGCCTTGTTAGTAATTGGGAGTCTGAAATTAAGAAGTGGATTGGAGAAAGGGTTCAGCTTATTGCTCTTTGTGAAAGCACCCGGGATGACGTTGTCTCTGGAATTGACACTTTCATAAGGCCTCAGAGCTGTTTTCAGGTGTTAATTGTTTCTTACGAGACATTCCGGATGCATTCATCAAAATTCGACAAAAGTGGATCCTGTGACCTCCTCATATGTGATGAGGCTCATCGGCTGAAGAACGATCAGACACTAACCAATCGGGCATTGGCTGCTCTTTCATGCAGTCGTCGCATTTTATTGTCAGGAACCCCAATGCAGAATGACCTAGAAGAGTTTTTTGCCATGGTTAACTTTACTAATCCAGGAGTCTTGGGGGATGCTGCATATTTTCGTCGGTACTATGAGGCACCGATCATTTGTGGAAGAGAACCTACAGCAACCGAAGAAGAGAGAAGGCTAGGTGTTGAGCGCTCTGCGGAACTAAGTTCCAAAGTAAATCAGTTTATACTGAGGAGGACAAATGCTTTGTTATCAAATCATTTACCCCCAAAGATAGTGGAAGTTGTTTGTTGCAAGTTGACCCCTCTCCAATCTGAATTGTATAACCATTTTATACATTCAAAAAATGTTAAACGAGTAATTGTCGAAGAGATGAAACAGTCAAAAATTTTGGCATATATTACAGCTCTTAAAAAGCTTTGCAATCATCCGAAGCTCATTTATGATACAATCAAAAGTGGGAGTCCAGGTACATCGGGGTTTGAGGACTGTATACGCTTTTTTCCACCAGAGATGTTTTCTGGAAGATCTGGATCATGGACTGGCGGCGATGGGGTTTGGGTTGAATTGTCTGGAAAAATGCATGTTTTAGCTCGATTACTGGCCCATCTGCGTCAGAAAACTAATGACCGAATTGTCCTTGTTTCAAACTACACTCAGACTCTAGACCTTTTTGCTCAATTGTGTCGTGAAAGAAGATATCCGCATTTGAGGCTTGATGGAACCACATCGATTAGTAAAAGACAAAAATTGGTCAACCGTTTTAATGACTTTTCAAAGGATGAGTTTATCTTTCTCTTAAGTAGCAAGGCTGGTGGGTGTGGGCTAAATTTGATAGGTGGAAATCGCCTTGTCCTATTTGATCCTGATTGGAACCCTGCCAATGACAAGCAAGCTGCTGCAAGAGTTTGGAGGGATGGGCAGAAGAAGAGAGTATACATCTATAGATTTTTGAGTACTGGAACAATCGAAGAAAAGGTATACCAACGTCAAATGTCAAAAGAAGGGCTTCAGAAAGTTATTCAGTCGGAGCAAACGGATAATCTTAAGACACAGGGGAACCTTCTTTCAACAGAAGACCTACGCGATCTTTTCACATTTCATGAGAATGCAAGGTCTGAAATTCATGAAAAGATGAACTGCATTCGCTGTAAAACTTGTGATTTAGAGGTCATGAATCCTGAGAATATAAGGGAGGTTGAAGATGGACCCAATCCAACAAATGAAAGTTGTCAGGTTGATCAAGGTGATATAGGTGGATTTGCAGAAATTTCTGGTACCTTGCATAAGTTGAAAAGCTCTGAGAAACAGCTCGGAAGTCCCCTTGAAGAGGATCTAGGAAGTTGGGGGCATCATTTTTCTCCAACATCAGTACCTGATGCAATTTTTCAAGCTTCAGCTGGTGATGAGGTCACATTTGTTTTCACAAACCAAGTAGATGGGAAGCTTATTCCTGTTGAATCAAATAGTTTAAAGCCTCAGAGGGTGGAAGGACATAAAGACCACTCTGATACAAGGGAAACCCAGAACCAGGGATCCTTGTTATTTTCGCAACGTCGTCCACGACTAACTTTTTCCATCTCTTCCAATAGAGATTCTACCAGGAGCATATCACCTGCCTCACACAAGCCTTTGCAAGGGGGATCTATGAAATTAACAAGAACGCCACTAAAAAGTATAATGCATGTACCAACAAAGCCTAGGACTTCTCGTGGTAATCAATTACCCCTCAAAAGATTGTCTACTGATTCCGAAGAGCATGATGATGATTTTATGTAA | 2805 | 0.4317 | MEEDDEVYSVSNPSDSGDEYNIDIEGDSENDDDEELSLLDSPPSDEDRKSQNVAALVRGNLVVRRQPLLPRVLSVSDAAAVARKPFKPPCSNGYSDQKEELGRRLWARKRFVPWGSSRPALVAVTNYLNIPSVVEKDVAEESVSLPPGVEPLLLWQPEESGKECGKTTPIVVDPLLVRFLRPHQREGVQFMFECVSGLSSSAGISGCILADDMGLGKTLQSITLLYTLLRQGFDGNSMVKKAIIVTPTSLVSNWESEIKKWIGERVQLIALCESTRDDVVSGIDTFIRPQSCFQVLIVSYETFRMHSSKFDKSGSCDLLICDEAHRLKNDQTLTNRALAALSCSRRILLSGTPMQNDLEEFFAMVNFTNPGVLGDAAYFRRYYEAPIICGREPTATEEERRLGVERSAELSSKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSELYNHFIHSKNVKRVIVEEMKQSKILAYITALKKLCNHPKLIYDTIKSGSPGTSGFEDCIRFFPPEMFSGRSGSWTGGDGVWVELSGKMHVLARLLAHLRQKTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNRFNDFSKDEFIFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQSEQTDNLKTQGNLLSTEDLRDLFTFHENARSEIHEKMNCIRCKTCDLEVMNPENIREVEDGPNPTNESCQVDQGDIGGFAEISGTLHKLKSSEKQLGSPLEEDLGSWGHHFSPTSVPDAIFQASAGDEVTFVFTNQVDGKLIPVESNSLKPQRVEGHKDHSDTRETQNQGSLLFSQRRPRLTFSISSNRDSTRSISPASHKPLQGGSMKLTRTPLKSIMHVPTKPRTSRGNQLPLKRLSTDSEEHDDDFM* | 935 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl13g00558 | 934 | Pfam | Helicase conserved C-terminal domain | 540 | 648 | IPR001650 | - | |
Eupl13g00558 | 934 | SMART | ultradead3 | 176 | 383 | IPR014001 | - | |
Eupl13g00558 | 934 | CDD | SF2_C_SNF | 532 | 660 | - | - | |
Eupl13g00558 | 934 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 67 | 829 | - | - | |
Eupl13g00558 | 934 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
Eupl13g00558 | 934 | Gene3D | - | 155 | 420 | IPR038718 | - | |
Eupl13g00558 | 934 | SMART | helicmild6 | 565 | 649 | IPR001650 | - | |
Eupl13g00558 | 934 | MobiDBLite | consensus disorder prediction | 828 | 934 | - | - | |
Eupl13g00558 | 934 | FunFam | Predicted protein | 443 | 517 | - | - | |
Eupl13g00558 | 934 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 168 | 421 | IPR027417 | - | |
Eupl13g00558 | 934 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Eupl13g00558 | 934 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 198 | 371 | IPR014001 | - | |
Eupl13g00558 | 934 | MobiDBLite | consensus disorder prediction | 850 | 885 | - | - | |
Eupl13g00558 | 934 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 425 | 736 | IPR027417 | - | |
Eupl13g00558 | 934 | CDD | DEXHc_RAD54 | 180 | 421 | - | - | |
Eupl13g00558 | 934 | FunFam | DNA repair and recombination protein RAD54 | 151 | 420 | - | - | |
Eupl13g00558 | 934 | MobiDBLite | consensus disorder prediction | 835 | 849 | - | - | |
Eupl13g00558 | 934 | Pfam | SNF2-related domain | 183 | 489 | IPR000330 | GO:0005524|GO:0140658 | |
Eupl13g00558 | 934 | Gene3D | - | 421 | 729 | IPR027417 | - | |
Eupl13g00558 | 934 | Gene3D | - | 443 | 712 | - | - | |
Eupl13g00558 | 934 | FunFam | DNA repair and recombination protein RAD54-like | 526 | 701 | - | - | |
Eupl13g00558 | 934 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 538 | 699 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl13g00558 | Eupl-Chr13 | 8225484 | 8254500 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl13g00558 | 529 | 707 | RAD5 or RAD16-like Gene Family | AT5G43530 | 36.111 | 1.22e-23 | 106 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Eupl13g00558 | SNF2_N | 9.7e-54 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl13g00558 | K10875 | - | nnu:104606018 | 1483.77 |