Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00556 ATGGCGACGCTCCTCTTCTCTCCTCTACCTTCAACAGCATTTCTCCACAAAAACCCTAATTCTTCATTCTCTCTGCTCTGCAACTTCTCCCCAACTTCCGTATCCATCTCCAACAACCCCAGCTCACGTAGGTCCAACTTCTTTGTTTCCTCTGCCGCCGTTGGATTCCCCATCGCCACCGAAACGAACGGCCATGATGCTTCCAGAAGAAACAGCTCTCTGGATATTGCCAAGCTTGGCATCTCTGAAGAGATTGTTTCCGCTCTCTCTCGACGGGGAATTACCGAACTCTTCCCCATTCAGAGAGCAGTGTTGGATCCAGCAATGGAAGGTCGTGATATGATTGGAAGAGCCATTACTGGATCTGGAAAAACTCTTGCCTTTGGTATCCCCATATTGGATAAAATTATTCGACATCGCAGCCCACGCAGGCAAAAGCGAGTTCCCTCTGCTCTCATTTTGGCTCCTACTCGGGAGCTTGCCCGGCAAGTGCAGAAAGAGTTTAAAGAATCTGCACCGAATTTGAGTAGTGCCTGTCTCTATGGTGGGATACCAATCATGAACCAAGTGCGTGTGCTTGGCTTTGGTATAGACATTGCTGTTGGCACACCTGGCAGAATTATTGACCTGGTTGAAAGGGGTGCCTTAAATCTGTCTGAAGTCAAGTTTGTTGTGCTGGATGAAGCTGATCAGATGTTGGCTATTGGTTTCCAAGAGGATGTTGAATGTATTCTAAGTTATTTACCTGCAAAGAAGCAGTGCATGTTATTTTCAGCAACAATGCCTCCATGGGTGAATGATCTTTCAAGGAAGTATCTCAGGGATCCTTTGGTTATTGACCTTGTGGGTGGTTCAGATCAAAAGTTGGCTGACGGTATCTCTCTCTATTCAGTTTTGTCGACCAGTTCTGGAAAGGAAAATATTCTCCCTACTTTAATCTCTACATATGGGCAAGGAGGTAAAAGCATAATTTTTACCAAAACAAAGAGAGATGCTGAAGAACTTTCAAGATCCATGGGAGGTATTCTTGCAAGCAGAGCATTACATGGAAACATGCAGCAGTTCCAGAGGGACAAAACTCTTGCGGCTTTTCGAGAGGGACAGTTTAGTGTGCTGGTTGCTACAGATGTTGCTGCACGTGGACTTGATATTCCTAATGTTGACCTGGTCATCCACTTTGAAATACCAAATACTTCTGAAATCTTTGTTCATAGATCTGGCCGGACGGGACGTGCTGGAAAGACGGGCACTGCAGTTCTTATCTATACAAAGAGTCAGCAACGTGCTGTCACCTTTATTGAGCGGGACCTTGGCTGCAAGTTTGAAAAGCTGCCAAGAATCATGGATGGTATTGGATACCAAACAGGAAACATGGACGTGGAGGAGAGCAAATATGGGAGGTATGGTGAACCAAGTGTGAGCCGCCTTGGGTATCCTGATCATTTTGAACGTCAGTTTGGAAGTTATAAAGCATCACAAGGACATGGCAATGCTACTGAAACTAGAAATCGGCGTTCTAAAGGATTCAGACAGTTGGAAGGACACTTTGGAGGTAATGAAAGTTCCAGAAAGAATAACTTCTCAAGGAATCCAGGGCCGAGGAATATTCAATTTGCAAAATCCAGAGGTAGGCAGTTTCATCATTATGATGACTCTGAGAGGGACCATATCGCGGAGAAGAATGCATATGATAGGAAGGAAGATGGTTTCAAGCAGATACTCGATATGCTCAAGGAGCAGTCATGA 1746 0.4513 MATLLFSPLPSTAFLHKNPNSSFSLLCNFSPTSVSISNNPSSRRSNFFVSSAAVGFPIATETNGHDASRRNSSLDIAKLGISEEIVSALSRRGITELFPIQRAVLDPAMEGRDMIGRAITGSGKTLAFGIPILDKIIRHRSPRRQKRVPSALILAPTRELARQVQKEFKESAPNLSSACLYGGIPIMNQVRVLGFGIDIAVGTPGRIIDLVERGALNLSEVKFVVLDEADQMLAIGFQEDVECILSYLPAKKQCMLFSATMPPWVNDLSRKYLRDPLVIDLVGGSDQKLADGISLYSVLSTSSGKENILPTLISTYGQGGKSIIFTKTKRDAEELSRSMGGILASRALHGNMQQFQRDKTLAAFREGQFSVLVATDVAARGLDIPNVDLVIHFEIPNTSEIFVHRSGRTGRAGKTGTAVLIYTKSQQRAVTFIERDLGCKFEKLPRIMDGIGYQTGNMDVEESKYGRYGEPSVSRLGYPDHFERQFGSYKASQGHGNATETRNRRSKGFRQLEGHFGGNESSRKNNFSRNPGPRNIQFAKSRGRQFHHYDDSERDHIAEKNAYDRKEDGFKQILDMLKEQS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00556 581 SMART ultradead3 93 296 IPR014001 -
Eupl13g00556 581 CDD SF2_C_DEAD 305 422 - -
Eupl13g00556 581 CDD DEADc 85 280 - -
Eupl13g00556 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 434 IPR027417 -
Eupl13g00556 581 SMART helicmild6 333 413 IPR001650 -
Eupl13g00556 581 Gene3D - 300 465 IPR027417 -
Eupl13g00556 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 452 IPR001650 -
Eupl13g00556 581 Pfam Helicase conserved C-terminal domain 307 413 IPR001650 -
Eupl13g00556 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 279 IPR014001 -
Eupl13g00556 581 MobiDBLite consensus disorder prediction 518 535 - -
Eupl13g00556 581 Gene3D - 75 283 IPR027417 -
Eupl13g00556 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 74 102 IPR014014 GO:0003724
Eupl13g00556 581 MobiDBLite consensus disorder prediction 511 543 - -
Eupl13g00556 581 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 72 455 - -
Eupl13g00556 581 Pfam DEAD/DEAH box helicase 98 267 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00556 Eupl-Chr13 8201792 8213629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00556 79 445 Eukaryotic Initiation Factors Gene Family AT3G19760 31.267 1.28e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00556 - K16911 msin:131242473 745.732