Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00548 ATGGTGGCGGCTAAGAGAACTTACGAGGAGTTCCGTCAGCAGAGATTGGAGGAGAACAAAAAACGGATGGAAGACCTCAATCTCACTCAGCTCGCTGCGGCTTTCCAAAACTCCACTCCCAAGCCCTCCCCGGTTAAGCAGTTCAAGCCACGATCCGTTCGCCAACAAGTAGATTTTGTTCACGTTAGAAGATCGAGTCGTGTTGCAAACAAACCTGCTCCAGTTTACAAGGAAGTCGCAGTTGATTATTTCGTAAGGCCTAGAAGTTATAATAAGCGGAGGGATTTGTCGAATCGAGTGTACGCCTCAGATGAAGCTAGGTCAAATGCAACAGAGAGAGCAGAGGAATTGGAATCAAGCCTAAAACATGATTTCCCTAGCTTTGTAAAGCCAATGCTCCAATCACATGTCACCGGTGGGTTTTGGCTGGGCCTTCCTCTGCAATTTTGCAAGAAGTACCTACCGAAACGCGACGAGACAATTACTTTGATTGATGAAAATGGGGATGAATACCCAACAAATTTCCTTGCCCAAAAGACTGGACTAAGTGCTGGATGGAGAGGGTTTTCAATAGCACATAATTTAGTAGATGGGGATGCTTTAGTTTTCCAGCTAGTCAAGCGTACAATATTTAAGGTCTACATAATAAGGGTGAATGATAAGAAAGCAGTTGATCGGGTCTCTAGATCTTCTAAATTTGGATGTCGGTGCAAAGCGAATCAATGCAGGTAA 732 0.4454 MVAAKRTYEEFRQQRLEENKKRMEDLNLTQLAAAFQNSTPKPSPVKQFKPRSVRQQVDFVHVRRSSRVANKPAPVYKEVAVDYFVRPRSYNKRRDLSNRVYASDEARSNATERAEELESSLKHDFPSFVKPMLQSHVTGGFWLGLPLQFCKKYLPKRDETITLIDENGDEYPTNFLAQKTGLSAGWRGFSIAHNLVDGDALVFQLVKRTIFKVYIIRVNDKKAVDRVSRSSKFGCRCKANQCR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00548 243 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Eupl13g00548 243 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Eupl13g00548 243 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Eupl13g00548 243 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 65 222 IPR044837 -
Eupl13g00548 243 SMART B3_2 128 219 IPR003340 GO:0003677
Eupl13g00548 243 Gene3D - 104 221 IPR015300 -
Eupl13g00548 243 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00548 Eupl-Chr13 8138337 8144814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00548 1 220 B3 DNA Binding Superfamily AT3G19184 58.850 1.60e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl13g00548 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00548 - - nnu:104605950 338.576