Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00547 ATGATTCTTGAGCAGGTAGTTGTTGATCATGCTGAGAGGCCTACAAGCTACAAACGAAAGAGGGCGATCGATAACGATAAAGCTATGGCGTGCGCCCTGGAGCGAGCAAAAGAAGTGCAATCAAATCTCGACCCCGAGTTCCCTAGCCTTGTGAAACTTATGCTCCATTCACATGTAACTAGTGGTTTTTGGCTGGGGCTTCCTGCTAAATTCTGCAATGCATACCTCCCGAAACTGGATGTTATGATTACTTTGGTAGATGAGAATGGGGAAAGATTCCCAACTAAATACCTTGTCGAAAAGACGGGACTGAGTGGTGGATGGAGAGGATTCTCCATTGCACACAAGTTAGTTAAAGGAGATGCTTTGGTCTTCCAGTTAGTCAAGGCTACTGAATTACAGGTGTACATTATAAGAGCATATGGTTTGGCTGAAATTGATGGGGCTTTTGGCCTTCTTAATTTGGTTACTCGTGCAAAAGGAACTGATTCAGATAATGCAGGTAAGCGTATCAAGACTAGTAAAAAAACTGTGAAAAAGAGTCTGAGGTCTCTTCCATTGGCCACTCTTCGAAGGAATACTCGAATTACGGCTAGCCACCCAATGCCAGTTTCCAACCTTGAGCCACCAGCCAGAGAACATTCTGAAAATGATAGTGAAGAGGTTGGCTCAGAAGTTCTAGAAGGCATCAGATTTGCGGAAACCACATTTGAGTTTAAAGACATTAAAAATCAAGAGAGTTTCACCATTGCGGTGGACGGTTTGATTATAGACTCTGAGCTCTCTGAACATGTGAGAGCTAAGTACTATGAGCTCTGCTGCAGTCAGAACATTTTTCTTCACGACCATCTCCTTGAGGGCATCAACTGTAAGTTGGTTGCAGGAGTCATTTCTGAAACTGTCAACATTGCTGATGCCATAAGAGCAAGCACGATTACCACCTCTCAGGATGAGTTTGCAACTTGGGATAAGAGTTTGAAAGCATTTGAGCAGCTGGGTATGAATGTGGGCTTCTTATGTGCTCGTCTGCAGCAGCTAGCAAGCCTTGCCTTAGAATCAGAACAGGAGATGGACTTAAAGAGGTATATAGAAGCTATAATTGGACGAGCTCGTGCAAATGAGGAGATAAGAACTCTCAAAACGAAACTTGAAGAATCAAAAGAGGCCTCTAAAAGGTTCGACACTGTGATTGAGGCTCTAAAAGTAAAAGCTGAAAGCCATGAGCTGAAGTTTCAGGCAGAGGTTAATGCTTCTTGGTGA 1260 0.4349 MILEQVVVDHAERPTSYKRKRAIDNDKAMACALERAKEVQSNLDPEFPSLVKLMLHSHVTSGFWLGLPAKFCNAYLPKLDVMITLVDENGERFPTKYLVEKTGLSGGWRGFSIAHKLVKGDALVFQLVKATELQVYIIRAYGLAEIDGAFGLLNLVTRAKGTDSDNAGKRIKTSKKTVKKSLRSLPLATLRRNTRITASHPMPVSNLEPPAREHSENDSEEVGSEVLEGIRFAETTFEFKDIKNQESFTIAVDGLIIDSELSEHVRAKYYELCCSQNIFLHDHLLEGINCKLVAGVISETVNIADAIRASTITTSQDEFATWDKSLKAFEQLGMNVGFLCARLQQLASLALESEQEMDLKRYIEAIIGRARANEEIRTLKTKLEESKEASKRFDTVIEALKVKAESHELKFQAEVNASW* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00547 419 Gene3D - 27 142 IPR015300 -
Eupl13g00547 419 ProSiteProfiles B3 DNA-binding domain profile. 50 141 IPR003340 GO:0003677
Eupl13g00547 419 Pfam B3 DNA binding domain 51 140 IPR003340 GO:0003677
Eupl13g00547 419 Coils Coil 369 389 - -
Eupl13g00547 419 SMART B3_2 50 141 IPR003340 GO:0003677
Eupl13g00547 419 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 140 IPR044837 -
Eupl13g00547 419 SUPERFAMILY DNA-binding pseudobarrel domain 43 140 IPR015300 -
Eupl13g00547 419 MobiDBLite consensus disorder prediction 198 220 - -
Eupl13g00547 419 CDD B3_DNA 48 139 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00547 Eupl-Chr13 8130573 8134679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00547 21 184 B3 DNA Binding Superfamily AT3G19184 47.904 9.82e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl13g00547 B3 8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00547 - - nnu:104605961 429.098