Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00526 ATGATGCAGTCAACGAACGGTGCTGATCCGCAGCAGCAACACCAACAACAGCAGCAGCAGCAGCAGCAGTGGATGGCGATGCAGTACCCGGCGGCGGCGATGGTGATGCAGCATCAGATGATGCCGCAGCACTACCCTCAGCACTACATGCCTTACTCCCATCAACAGCAGCAGCAACCACAGCCACAACAACAGCAACAACAACAACAACAACAGCAGCAACAGGGATCAACGGAGGAGAATAAGACGATCTGGGTTGGGGACCTTCATTATTGGATGGACGAGAATTATCTGCACAGCTGCTTCGCTCACACCAGCGAGGTCACCTCGATAAAGGTTATTCGCAATAAGCAGACTGGTCAATCCGAGGGATATGGATTTGTGGAATTCTTTTCACATGCAGCAGCTGAGAAAGTTCTGCAGAACTACAATGGCACTGTAATGCCTAACACAGAACAGCCCTTCCGCTTGAACTGGGCATCGTTTAGCATGGGTGATAGGCGTTCAGATGTTGGTTCAGACCACTCTATATTTGTAGGAGATTTGGCTTCAGACGTTACTGATACCTTACTGCAAGAAACTTTTGCCAGTAGATATCCATCTGTAAAAGGGGCGAAAGTTGTTATTGATGCAAATACTGGCCGTTCAAAAGGTTATGGATTTGTGAGGTTTGGTGACGATAATGAGAGGTCACGGGCTATAACTGAAATGAACGGTGTATATTGTTCTAGTAGGCCCATGCGCATAGGTGTTGCAACCCCTAGGAAATCATCTGGATATCAGCAACAGTATTCTTCCCAAGGTGGATTTGCATCAAATGGTGCCTCTGCCCAAGGCTTCCAGTCTGATGACGATTCTACTAACACAACAATATTTGTAGGAGGGCTGGACTCCAATATCACTGATGAAGATCTCAGGCAGCCATTTTCTGAATATGGTGAGATTGTCTCTGTAAAAATACCTGTTGGGAAAGGATGTGGATTCATACAGTTTGCTAACAGAAGTAACGCCGAGGAGGCATTGCAGAGGTTGAACGGGACAGTCATTGGCAAGCAGACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCGAACAAGCAGTCGAGAGCAGACCCTGGTAACCAGTGGAATGGAGCATACTATGGTGGGCAGGTTTATGACGGATACGGCTATGCTGCACCACCACCTCAGGATCCAAGCATGTATGCAGCAGCTGCGACATATGGGGCGTATTCTATGTATGGCAACCACCAGCAGCAAGTAAGCTGA 1266 0.4818 MMQSTNGADPQQQHQQQQQQQQQWMAMQYPAAAMVMQHQMMPQHYPQHYMPYSHQQQQQPQPQQQQQQQQQQQQQGSTEENKTIWVGDLHYWMDENYLHSCFAHTSEVTSIKVIRNKQTGQSEGYGFVEFFSHAAAEKVLQNYNGTVMPNTEQPFRLNWASFSMGDRRSDVGSDHSIFVGDLASDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAITEMNGVYCSSRPMRIGVATPRKSSGYQQQYSSQGGFASNGASAQGFQSDDDSTNTTIFVGGLDSNITDEDLRQPFSEYGEIVSVKIPVGKGCGFIQFANRSNAEEALQRLNGTVIGKQTVRLSWGRNPANKQSRADPGNQWNGAYYGGQVYDGYGYAAPPPQDPSMYAAAATYGAYSMYGNHQQQVS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00526 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 152 IPR000504 GO:0003723
Eupl13g00526 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 354 IPR000504 GO:0003723
Eupl13g00526 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 246 IPR000504 GO:0003723
Eupl13g00526 421 MobiDBLite consensus disorder prediction 52 80 - -
Eupl13g00526 421 Gene3D - 42 174 IPR012677 -
Eupl13g00526 421 FunFam Polyadenylate-binding protein RBP47B 168 265 - -
Eupl13g00526 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
Eupl13g00526 421 FunFam polyadenylate-binding protein RBP47 isoform X2 33 167 - -
Eupl13g00526 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723
Eupl13g00526 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 67 365 - -
Eupl13g00526 421 MobiDBLite consensus disorder prediction 1 21 - -
Eupl13g00526 421 Gene3D - 175 251 IPR012677 -
Eupl13g00526 421 SUPERFAMILY RNA-binding domain, RBD 45 163 IPR035979 GO:0003676
Eupl13g00526 421 Gene3D - 271 392 IPR012677 -
Eupl13g00526 421 MobiDBLite consensus disorder prediction 255 283 - -
Eupl13g00526 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 162 IPR000504 GO:0003723
Eupl13g00526 421 FunFam Polyadenylate-binding protein RBP47 271 391 - -
Eupl13g00526 421 SUPERFAMILY RNA-binding domain, RBD 175 364 IPR035979 GO:0003676
Eupl13g00526 421 CDD RRM3_NGR1_NAM8_like 288 359 - -
Eupl13g00526 421 SMART rrm1_1 83 158 IPR000504 GO:0003723
Eupl13g00526 421 SMART rrm1_1 290 357 IPR000504 GO:0003723
Eupl13g00526 421 SMART rrm1_1 176 250 IPR000504 GO:0003723
Eupl13g00526 421 CDD RRM2_SECp43_like 174 253 - -
Eupl13g00526 421 CDD RRM1_SECp43_like 83 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00526 Eupl-Chr13 7783836 7793048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00526 84 368 Eukaryotic Initiation Factors Gene Family AT2G23350 27.586 1.13e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00526 - - nnu:104605688 639.802