Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00516 ATGGAACCAACCAACACCAACACCAACACGTCTTCTTCTTCTTCGTCGTCGTCGTTGTCGACTTCGTCTGAGTGTTCTTTGTCTAAAGAAACGAGAACGATAAAGAAGGCAGAGAAGATCAAAGGACCTTGGAGCGCCGAAGAAGATAAGATCCTGACCCGACTCGTCAATCAACACGGCGCCCGAAATTGGACCTTAATAAGCCGTTACATACCGGGTCGGTCGGGTAAGTCGTGCCGGCTTAGGTGGTGCAATCAGCTCAGCCCAATAGTTGCGCACCGTCCGTTTTCCCTTGCTGAGGACGAGACTATCTTGGGAGCTCATGCAAGGTATGGTAATAGGTGGGCCACCATTGCTAGACTGCTTCCGGGTCGGACTGATAACGCGGTGAAGAACCATTGGAACTCTACACTTAAGAGGAAGCAAAGAGAACAACAGGAGGGCGATAATGCAGGTCCGTCGTCCTTGATGGTTGGTTCATCTTTATCAGCATCGGAATATGACCCACCAACCACTCTGACACTTGCACCGCCTGGTAGCAGTTGTTCGGTGCCGGAACCACAACCGGAGAATGATCCTTCGGATTTTTGGGATGTGATGAGAGATGTTATTGCCAGAGAAGTCAGGAACTACGTGTCTGAAATAGCTGGGTTACCATAG 660 0.5015 MEPTNTNTNTSSSSSSSSLSTSSECSLSKETRTIKKAEKIKGPWSAEEDKILTRLVNQHGARNWTLISRYIPGRSGKSCRLRWCNQLSPIVAHRPFSLAEDETILGAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRKQREQQEGDNAGPSSLMVGSSLSASEYDPPTTLTLAPPGSSCSVPEPQPENDPSDFWDVMRDVIAREVRNYVSEIAGLP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00516 219 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Eupl13g00516 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 142 IPR017930 -
Eupl13g00516 219 FunFam MYB transcription factor 41 92 - -
Eupl13g00516 219 CDD SANT 43 85 IPR001005 -
Eupl13g00516 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 91 IPR017930 -
Eupl13g00516 219 SMART sant 40 89 IPR001005 -
Eupl13g00516 219 SMART sant 92 140 IPR001005 -
Eupl13g00516 219 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Eupl13g00516 219 Gene3D - 95 152 - -
Eupl13g00516 219 CDD SANT 95 138 IPR001005 -
Eupl13g00516 219 MobiDBLite consensus disorder prediction 148 188 - -
Eupl13g00516 219 PANTHER MYB PROTEIN-RELATED 41 155 - -
Eupl13g00516 219 MobiDBLite consensus disorder prediction 1 31 - -
Eupl13g00516 219 Gene3D - 40 92 - -
Eupl13g00516 219 Pfam Myb-like DNA-binding domain 95 137 IPR001005 -
Eupl13g00516 219 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Eupl13g00516 219 MobiDBLite consensus disorder prediction 138 198 - -
Eupl13g00516 219 MobiDBLite consensus disorder prediction 1 28 - -
Eupl13g00516 219 SUPERFAMILY Homeodomain-like 39 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00516 Eupl-Chr13 7573837 7574865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00516 33 141 MYB Transcription Factor Family AT4G37260 76.147 1.99e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g00516 Myb_DNA-binding 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00516 - - nnu:104605508 298.13