LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g00513	ATGGTGAACCCACGGTGCTTTTTAGACATAAGCATAGGAGGAGAGCTGGAAGGAAGGATATTGGTGGAGCTCTACAGTGATGTGGTTCCCAAAACGGCCGAGAATTTCAGGGCTCTCTGCACTGGAGAGAAGGGCATTGGTCCTAACACTGGTGTTCCTCTCCATTTCAAGGGTGTCTGTTTTCATCGCATTATCAAAGGTTTTATGATACAAAGTGGAGATATCTCTGCTGGGAATGGCACGGGGGGAGAATCCATTTATGGGTTGAAATTTGAAGATGAGAACTTTGATCTGAAACATGAACGGAAAGGAATGTTATCCATGGCCAATTCTGGCCTGAACACCAATGGTTCCCAGTTCTTTATTACTACTACTAGAACTTCTCATCTAGATGGAAAACATGTTGTATTTGGGAAGGTAATTAAAGGCATGGGAGTGGTTCGTTCCATTGAACATGTCTCCACAGGTGATGGTGATTATCCCACTCTTGATGTTGTAATTGCGGATTGTGGAGAAATTCCTGAGGGTACGGATGATGGGACTTCTAATTTCTTTGAAGATGGTGATACTTATCCTGATTGGCCAGCTGACCTTGATGAGAAGCCGAATGAGATCTCTTGGTGGATGAATGCTGTGGATTCTGCGAAAAGTTTTGGAAATGAGCACTACAAGAAGCAAGACTATAAGATGGCTCTTAGAAAGTATCGGAAGGCTTTGCGCTACTTGGATGTCTGCTGGGAGAAAGAAGACATTGATGAAGAAAAGAGTTCATCTTTGAGGAAGGCAAAGTCACAGATATTCACAAATAGTTCGGCTTGTAAATTGAAACTAGGAGATTTAAAAGGAGCATTGTTGGATACAGACTTTGCAATGCGCGATGGAGAGGGTAATGTGAAGGCTTTGTTTCGCCAAGGTCAGGCATACATGGCGCTCAATGATATAGATGCTGCGGTTGAAAGCTTCAAGAAGGCATTAGAGTTGGAGCCAAATGATGGTGGAATAAAAAAGGAGTTCGCCGCTGCAAAGAAGAAGGTTGCTGATAGACGTGATCTGGAGAGAAAGGCGTATTCTAGAATGTTCCAATAG	1086	0.4328	MVNPRCFLDISIGGELEGRILVELYSDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGVCFHRIIKGFMIQSGDISAGNGTGGESIYGLKFEDENFDLKHERKGMLSMANSGLNTNGSQFFITTTRTSHLDGKHVVFGKVIKGMGVVRSIEHVSTGDGDYPTLDVVIADCGEIPEGTDDGTSNFFEDGDTYPDWPADLDEKPNEISWWMNAVDSAKSFGNEHYKKQDYKMALRKYRKALRYLDVCWEKEDIDEEKSSSLRKAKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGEGNVKALFRQGQAYMALNDIDAAVESFKKALELEPNDGGIKKEFAAAKKKVADRRDLERKAYSRMFQ*	362

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl13g00513	361	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	5	173	-	-
	Eupl13g00513	361	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	172	IPR002130	GO:0000413\|GO:0003755
	Eupl13g00513	361	SUPERFAMILY	Cyclophilin-like	1	174	IPR029000	-
	Eupl13g00513	361	Gene3D	Tetratricopeptide repeat domain	212	361	IPR011990	GO:0005515
	Eupl13g00513	361	CDD	cyclophilin_ABH_like	4	171	-	-
	Eupl13g00513	361	ProSiteProfiles	TPR repeat region circular profile.	298	331	-	-
	Eupl13g00513	361	ProSiteProfiles	TPR repeat profile.	298	331	IPR019734	GO:0005515
	Eupl13g00513	361	FunFam	peptidyl-prolyl cis-trans isomerase D	210	361	-	-
	Eupl13g00513	361	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	8	171	IPR002130	GO:0000413\|GO:0003755
	Eupl13g00513	361	Pfam	Tetratricopeptide repeat	298	331	IPR001440	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g00513	Eupl-Chr13	7546598	7559413	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g00513	17	170	U-box Gene Family	AT5G67530	42.581	4.68e-32	125

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g00513	K05864		-	nnu:104605465	651.358

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