Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00511 ATGGCGAGGGAGAAAATTCAGATCAGGAAGATCGACAACGCAACGGCGAGGCAGGTGACCTTCTCGAAGAGGAGAAGAGGGCTTTTCAAGAAGGCTGAAGAGCTCTCCATTCTATGCGACGCCGAGGTTGCTCTCATCATCTTCTCTGCCACGGGGAAGCTCTTCGAGTTCTCCAGCTCAAGCATGAAGGAGATACTTGAAAGGCATAATTTGCACTCGAAGAACCTTCACAAATTCGACCAACCATCTCTTGAGCTTCAGCTAGAGAATAGCAACTATGCCAGGTTGAGCAAGGAAGTTGCAGAGAAAAGCCACCAATTGAGGCAGATGAGGGGAGAAGAGCTCCATGGATTAAACATAGAAGAGTTGCAGCAACTAGAGAAATCGCTCGAAGCAGGATTGAGCCGTGTGATAGAAACAAAGGGAGAACGGATCATGAAAGAGATCAGTACCCTTCAAAGAAAGGGAGTGCAGTTGATGGAAGAGAATGAGCGATTAAGACAGCAAATGGTGGAGACGTCGAAAGGACAAAAACATGTTGCTGCTGAGTCGGAGACTGTGGTCTTTGAAGAAGGCGGCCAATCATCAGAATCTGTCACCAACATCTGCAGCTCCACTGGTCCTCCTCAAGACTACGATAGCTCCGATACGTCTCTCAAGTTGGGGTTACCTTTCTCTAGCTGA 684 0.481 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSILCDAEVALIIFSATGKLFEFSSSSMKEILERHNLHSKNLHKFDQPSLELQLENSNYARLSKEVAEKSHQLRQMRGEELHGLNIEELQQLEKSLEAGLSRVIETKGERIMKEISTLQRKGVQLMEENERLRQQMVETSKGQKHVAAESETVVFEEGGQSSESVTNICSSTGPPQDYDSSDTSLKLGLPFSS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00511 227 Coils Coil 93 113 - -
Eupl13g00511 227 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Eupl13g00511 227 MobiDBLite consensus disorder prediction 189 227 - -
Eupl13g00511 227 Coils Coil 149 169 - -
Eupl13g00511 227 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Eupl13g00511 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 Pfam K-box region 90 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g00511 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g00511 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Eupl13g00511 227 FunFam Transcription factor, MADS-box 13 83 - -
Eupl13g00511 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl13g00511 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Eupl13g00511 227 MobiDBLite consensus disorder prediction 188 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00511 Eupl-Chr13 7524020 7539340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00511 1 225 MADS-box Gene Family AT2G22540 71.849 2.10e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl13g00511 K-box 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00511 - - nnu:104611910 387.882