Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00490 ATGGGAAAGGATTGCGGTTCTTGGTTTCATCAGCAGCATTTGCCTTGGCAATCGCCCAATTTGAACCGCACAAGCGCCGCCCCTGATCTGGGGGCGCAAAATATTTTCTCAGCTTGTACAAATCCTTATACTCCTATGGTTTCTGCAAATGGATCTTTGCTGGGATCTGCAGTTTCCCAGTTGCCTCATTTTAAGATGGGCCAAACAAATGAACTGCATCCCCATGGGTGGTTTTATTGTTTACCTAGCCACCACCAGGTTTCAACGCCCAGCCCGAACACTGTTCTCAAGGAGAAGCTATCTCCATTAACGAATGTATGCGGTGAGGAGGCCAAACCCAATGCAGTATCCGCATCTGTTCAGAAGAGATTTCTTGTTTTCAATCAGTCCGGGAATCAAGCAAGCATGATTTATAGTTCTGCAATTGGGTCTCCAGTTCAACACCTGAGTTGTGGGAACCCAAAACCATTTGATTCCTATCGTTTAATTGAAGAAACGGCAACTAAAAGGGATCTAATTTATCAAGCTGGGCCTGTTATCTCCAATGGATTGAATGAGAATCAGGAAACTGGTGATGGAAGTGAAATGCATGAAGATACAGAAGAACTTGATGCCTTACTATACTCTGATGATGAGAGTGATTACGACGACGAGGAAACTAGCACAGGTCATTCCCCAAGTGAAATGACTGTGTACAAGAAGCAAGAAGAAGCCAAAGGAAGTGGCGAAGAAGTTGGTAGTTCTGCTGGCGGAACTAAAAGGAAGAGACTACTCGAGGACGAAGAACATGGTACATCGTCACTTATGGACACGGCAAGTTCGGTAAAACCCAATGGATCATGGGAATATGAAGATGACGCAGAATCAAGCTGCGTAAAAGGCGGGATGCAAGAAGGAGAAATGGATTCATTACCAGCCAACAAACGGTTGAGGAGGGAGAGAATACGAGAGACGGTGAGCATCCTTCAAAGCATAATCCCAGGCGGGAAGGGCAAAGATGCAATCTTGGTTCTCGACGAAGCGATCCAATACCTGAGATCCCTAAAGCTCAAAGCTAAATACTTGGGAGCTTCTTTGAAGTAG 1083 0.4534 MGKDCGSWFHQQHLPWQSPNLNRTSAAPDLGAQNIFSACTNPYTPMVSANGSLLGSAVSQLPHFKMGQTNELHPHGWFYCLPSHHQVSTPSPNTVLKEKLSPLTNVCGEEAKPNAVSASVQKRFLVFNQSGNQASMIYSSAIGSPVQHLSCGNPKPFDSYRLIEETATKRDLIYQAGPVISNGLNENQETGDGSEMHEDTEELDALLYSDDESDYDDEETSTGHSPSEMTVYKKQEEAKGSGEEVGSSAGGTKRKRLLEDEEHGTSSLMDTASSVKPNGSWEYEDDAESSCVKGGMQEGEMDSLPANKRLRRERIRETVSILQSIIPGGKGKDAILVLDEAIQYLRSLKLKAKYLGASLK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00490 360 CDD bHLH_AtSAC51_like 307 356 - -
Eupl13g00490 360 MobiDBLite consensus disorder prediction 180 199 - -
Eupl13g00490 360 Gene3D - 302 355 IPR036638 GO:0046983
Eupl13g00490 360 MobiDBLite consensus disorder prediction 249 266 - -
Eupl13g00490 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 356 IPR036638 GO:0046983
Eupl13g00490 360 MobiDBLite consensus disorder prediction 211 285 - -
Eupl13g00490 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Eupl13g00490 360 PANTHER TRANSCRIPTION FACTOR BHLH145 8 358 IPR037546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00490 Eupl-Chr13 7001093 7004903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00490 1 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 32.231 3.08e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00490 - - nnu:104608609 373.244