Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00485 ATGGAATTTGATGATCAAGAAGAACAAGAGGAGGAGATCGGGTTGCCGGTAACGGCGAGTTACGAGTCACTCGGAAACTCGTCGAGAGCGAAACTGGCGAGTGGAGGAGTAGAAGCGACCGTTGCGGTGCGAAAACCACCGAGCAGGTACAGAGAGTGCTTAAAGAACCATGCGGTGAGTATCGGAGGACACGCCGTAGACGGATGTGGAGAGTTCATGCCAGCCGGAGAAGAAGGTAGTCTCGACGCGTTAAAATGCGCTGCCTGCAACTGCCATCGTAACTTCCATCGCAAGGAAACAGACGGGGAGGGCTTCCAACACCAGTTATCACCGTATTACCGTACGGCACCAGCTGGTTACCTCCACGTGACGCCGCAGCATCGGCCGTTGGCACTGCCGTCAACTTCTGGAGGCGGTGGGCATAGTCGGGAGGATCAGGAGGACATGTCGAACCCTAGCGGTGGAGGGAAGAAGCGGTTCAGAACAAAGTTCACTCAAGAGCAGAAGGAGAAGATGCTGGAGTTTGCAGAAAGACACGGGTGGAGAATCCAGAAGCAGGACGAGGCGGCCGTGCAGCAGTTTTGTAACGAGACGGGTGTGAAGCGGCACGTGCTAAAGGTGTGGATGCACAACAACAAGCACACGCTGGCTAAGACCGAGATTGATAGTTGA 672 0.5491 MEFDDQEEQEEEIGLPVTASYESLGNSSRAKLASGGVEATVAVRKPPSRYRECLKNHAVSIGGHAVDGCGEFMPAGEEGSLDALKCAACNCHRNFHRKETDGEGFQHQLSPYYRTAPAGYLHVTPQHRPLALPSTSGGGGHSREDQEDMSNPSGGGKKRFRTKFTQEQKEKMLEFAERHGWRIQKQDEAAVQQFCNETGVKRHVLKVWMHNNKHTLAKTEIDS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00485 223 Gene3D - 141 219 - -
Eupl13g00485 223 SUPERFAMILY Homeodomain-like 145 218 IPR009057 -
Eupl13g00485 223 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Eupl13g00485 223 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 216 - -
Eupl13g00485 223 NCBIfam homeobox domain, ZF-HD class 157 213 IPR006455 -
Eupl13g00485 223 Pfam ZF-HD protein dimerisation region 49 100 IPR006456 -
Eupl13g00485 223 MobiDBLite consensus disorder prediction 141 161 - -
Eupl13g00485 223 MobiDBLite consensus disorder prediction 128 161 - -
Eupl13g00485 223 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Eupl13g00485 223 FunFam Zinc-finger homeodomain protein 2 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00485 Eupl-Chr13 6870372 6872486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00485 1 221 ZF-HD Transcription Factor Family AT4G24660 55.459 5.18e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl13g00485 ZF-HD_dimer 6.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00485 - - nnu:104603998 366.311