Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00480 ATGTTGCGGTTTTCGATTCGCCGAGGTAGATGCTTTAAACCATGGAATCCTCAAATTTCTGCTCTCGGATTCTCACATTTCTCGACGGCCACCGAAGCATCTCCAACGCACCTAAACCCTCCTCCGAAGGTTCGAAATCTTATTGGAGGAGAATTTGTGGATTCTCAATCGACTTCAACGATCAAAGTCATAAATCCAGCGACCCAAGAGGTAGTTTCCCAAGTGCCATTAACTACCAATGAGGAATTCAAAGCTGCAGTATGTGCAGCAAAACAGGCCTTTGCGCAATGGAGAAACACGCCCGTCACTACCCGTCAACGCATCATGTTCAAGCTCCAAGAGCTCATCCGTAGAGACATTGATAAACTCGCCATGAATATAACTATCGAACAGGGGAAAACATTGAAGGACGCACATGGTGATGTGTTCCGTGGGTTAGAGGTGGTGGAGCATGCATGTGGAATGGCAAGTCTGCAAATGGGGGAATTTGTTTCCAATGTGTCTAATGGAATTGATACATTCAGTATTAGAGAACCACTCGGGGTTTGTGCTGGGATATGTCCCTTCAACTTTCCAGCAATGATTCCTTTATGGATGTTCCCAATGGCAGTTACATGTGGAAATACTTTTGTTTTAAAGCCATCAGAGAAAGACCCAGGGGCTTCTATGATACTTGCTGAGCTAGCAATGGAAGCAGGTTTGCCTAATGGTGTCTTAAACATTGTTCATGGCACCAATGACATAGTTAACAATATTTGTGATGATGACGACATTAAGGCTATATCATTTGTTGGTTCAAATACAGCTGGCATGCATATATATGCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCCAATATGGGGGCCAAAAATCATGCAATTATAATGCCAGATGCAAACGTGGATGCTACTTTGAATTCGCTAGTTGCTGCTGGCTTTGGTGCTGCAGGGCAAAGGTGCATGGCACTCAGCACAGCTGTTTTTGTCGGAGGCTCAAAACCATGGGAGGAGGAACTTGTGCAGCGTGCCAAAGCACTTAAAGTAAATGCGGGATCTGAGCCTGGTGCAGACCTTGGTCCAGTGATTAGCAAACAGGCAAAGGATCGAATATGCAGATTGATCAAAACTGGTGTCAAAAGTGGTGCTAGACTTGTGCTTGATGGGAGAAATGTTGTGGTTCCAGGCTATGAGGAGGGAAACTTTGTTGGTCCTACCGTCTTATCCGATGTGACAAGTAACATGGACTGTTACAAGGAGGAAATCTTCGGTCCAGTTCTCATCTGCATGCAGGCTCACAGCCTAGAAGAGGCTATAGACATTGTTAACAGAAACCAATATGGTAATGGAGCATCTATATTTACCACATCTGGTGTGGCTGCAAGGAAATTCCAGAATGAGATTGAAGCAGGCCAGGTTGGCATTAATGTTCCCATTCCGGTTCCATTGCCTTTTTTCTCATTCACTGGATCCAAGGCATCTTTCGCAGGCGATCTCAATTTCTATGGCAAGGCTGGCGTGCAGTTTTACACCCAAATCAAAACAGTGACTCAACAATGGAAGGATTTACCGAGCCAGGGAGTATCACTGGCTATGCCCACATCTCAAAAATCATAA 1617 0.4496 MLRFSIRRGRCFKPWNPQISALGFSHFSTATEASPTHLNPPPKVRNLIGGEFVDSQSTSTIKVINPATQEVVSQVPLTTNEEFKAAVCAAKQAFAQWRNTPVTTRQRIMFKLQELIRRDIDKLAMNITIEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEFVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASMILAELAMEAGLPNGVLNIVHGTNDIVNNICDDDDIKAISFVGSNTAGMHIYARAAAKGKRVQSNMGAKNHAIIMPDANVDATLNSLVAAGFGAAGQRCMALSTAVFVGGSKPWEEELVQRAKALKVNAGSEPGADLGPVISKQAKDRICRLIKTGVKSGARLVLDGRNVVVPGYEEGNFVGPTVLSDVTSNMDCYKEEIFGPVLICMQAHSLEEAIDIVNRNQYGNGASIFTTSGVAARKFQNEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFYTQIKTVTQQWKDLPSQGVSLAMPTSQKS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00480 538 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 48 295 - -
Eupl13g00480 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 48 497 IPR016162 GO:0016491
Eupl13g00480 538 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 289 489 - -
Eupl13g00480 538 CDD ALDH_F6_MMSDH 44 520 IPR010061 GO:0004491
Eupl13g00480 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 10 535 IPR010061 GO:0004491
Eupl13g00480 538 SUPERFAMILY ALDH-like 36 522 IPR016161 GO:0016491
Eupl13g00480 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 289 489 IPR016163 GO:0016620
Eupl13g00480 538 Pfam Aldehyde dehydrogenase family 52 516 IPR015590 GO:0016491
Eupl13g00480 538 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 520 IPR010061 GO:0004491
Eupl13g00480 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 314 325 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00480 Eupl-Chr13 6736861 6744346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00480 1 504 Aldehyde Dehydrogenase Gene Family AT2G14170 78.175 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00480 K00140 - ming:122085097 935.636