LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g00470	ATGATGGCCGCGGTGAATCCACAACCACTGCAATCTCGTCCCTTTGATGACCATGACGATCACATGCAGATCCCAATCCAGATCGACGACGACGATGGCGATTACGACGCTGATGGCTTCGGTGGAGGGGGTGAAGAGACGATGGATGATGTCGACGACGTACAGGTGAATTCCGGAAACCCTGGGGATCACAATGTTGCGTTGCAGTCTCGGACGAGTGAGCTCACCCTCTCGTTCGAAGGCGAAGTTTACGTCTTCCATGCAGTGACACCAGAAAAGGTGCAAGCAGTGTTGTTGCTTTTGGGAGGGCGTGAAATACCTACTGGTGTGCCTAACATTGATGTATTATTCCATCAGAATAACAGGGGTGTGGGCAATGCTCCACGGCGATCGAATTTTTCACGAAGAATTGCTTCCCTGGTTAGGTTCCGCGAAAAGCGGAAAGAACGATGCTTTGACAAGAAAATCCGGTACAATGTTCGTAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGGCAGTTTGCATCCGTAAGAGAGGGCTATAAGGAAGGGATAGCAGCTGCTTCCAGTTGGGATCCTTCACAGAGCTGCCTTCAGGATGATAATACTCATCCAGAAACTCCTGTGCGCAGATGTCAACATTGTGGTACCAGTGAAAAGTCCACTCCAGCTATGCGCCGTGGGCCAGCAGGTCCAAGGTCTTTATGCAACGCATGCGGGCTGATGTGGGCAAACAAGGGAACTTTGAGGGATCTCACCAAGAGTGGAAGGGGTGGTCATTCTTTGAATCAAATTGAGCAGGAGATTCCGGGTGATACTAATGCTTTAACCATGGAAATGGAAAATTCCTCTGCCGACCCAGATGAGCAAGAAATCCCTGATGGTGTGACTTTGGGAACTGAGAATCCTTCTGTCAACTCATATGAGCAGGGAAGTCCGGAAGATATGAAACCTTTACCTCTGGAGATTGGGAATCCTCCCGTTGGTCTGGATGAGCAGGAAACCTCTGAAGATCTTACTAAGCCTTTACCAGTGGGAATCGAGAATCTTTCTACCAACCCTGATGATGAGGAGGGAACTCCATATGATCTTGGTCATATTTCAACCGCAGAGATCGGGACTCCTGCCAACCAAAATTGA	1143	0.4917	MMAAVNPQPLQSRPFDDHDDHMQIPIQIDDDDGDYDADGFGGGGEETMDDVDDVQVNSGNPGDHNVALQSRTSELTLSFEGEVYVFHAVTPEKVQAVLLLLGGREIPTGVPNIDVLFHQNNRGVGNAPRRSNFSRRIASLVRFREKRKERCFDKKIRYNVRKEVAQRMHRKNGQFASVREGYKEGIAAASSWDPSQSCLQDDNTHPETPVRRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKSGRGGHSLNQIEQEIPGDTNALTMEMENSSADPDEQEIPDGVTLGTENPSVNSYEQGSPEDMKPLPLEIGNPPVGLDEQETSEDLTKPLPVGIENLSTNPDDEEGTPYDLGHISTAEIGTPANQN*	381

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Eupl13g00470	380	CDD	ZnF_GATA	212	255	IPR000679	GO:0006355\|GO:0043565
Eupl13g00470	380	ProSiteProfiles	CCT domain profile.	136	178	IPR010402	GO:0005515
Eupl13g00470	380	SMART	GATA_3	207	260	IPR000679	GO:0006355\|GO:0043565
Eupl13g00470	380	Pfam	CCT motif	136	177	IPR010402	GO:0005515
Eupl13g00470	380	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	211	259	-	-
Eupl13g00470	380	Gene3D	-	205	264	IPR013088	GO:0006355\|GO:0008270
Eupl13g00470	380	ProSiteProfiles	Tify domain profile.	68	103	IPR010399	-
Eupl13g00470	380	PANTHER	GATA TRANSCRIPTION FACTOR 28	3	339	IPR045280	GO:0006355
Eupl13g00470	380	MobiDBLite	consensus disorder prediction	1	49	-	-
Eupl13g00470	380	ProSitePatterns	GATA-type zinc finger domain.	213	240	IPR000679	GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g00470	Eupl-Chr13	6552254	6570005	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g00470	30	256	Tify Gene Family	AT1G51600	53.219	3.43e-71	223

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Eupl13g00470		CCT	1.5e-13	CL0281

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g00470	-		-	nnu:104595522	432.565

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