Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00469 ATGCCTGAATCGAACTTCCAAGATCCTCATGTTCGTCAAGGTGATCAATCGTACGGCCATGCCATGGACAATCTCCCGAGCCGCATCGAAGACGAAGATGAAGACCATGGTGCAGGCGCCGAGTCAATCTACCGCCATCGTAGCCGCTTCGAAGACGAGGTGATGGACGGTTTCGAAGACGGCGGTTCCGATTCTGACTACCTTGCTGTTAGCAATCTGTCCTTGCCGGCTCGGGGAGAGGGCATGGAACAGCTCACCCTTTCGTTTCAGGGCGAGATCTACATGTACGACGCTGTTTCACCCGACAAGGTGCAGGCGGTGCTGTTACTGTTGGGAGGGTACGAAATTCCTTCTGGCGTGCCTAGCGTGGCAATAACATCTCAGAACCAAAGGTTTGAAAATTTTCCTGGACGCTCGAGTCTTCCACAGAGGGCTGCTTCTTTGAGTAGGTTCCGTGAAAAGCGAAAAGAACGGTGCTTTGATAAGAAAATTCGATATAGTGTCCGTAAAGAAGTTGCGCTCAGAATGCAGCGTAAAAAGGGGCAGTTTACTTCATCTAAGCCAAGTGCTACTGAGAATTCAGTACAAGATGAGCAACAGCCTGAAACTCTATGTACACATTGTGGCACTAGTTCAAAGTCCACACCATTGATGCGTCGTGGACCTGCTGGCCCGAGGACTCTATGCAATGCATGTGGGCTTATGTGGACAAACAAGGGAACTTTAAAATATCTTTCCACGTCTTCAACTGTGGAAACTCAAAATCCTTCTATGAGCCAAATCGTACAGTCAACAGAAGAGGTATGTCTCTCACCGAAAGATTATGAATTCAATTTGGCTTGTAAGCTACTGTTGCATGGACTTGTATTTTTTCTCGTCTTGGTAATAAAACTACTCTACCGTATACTTTTGTTCCTCAAAGGATGA 927 0.4725 MPESNFQDPHVRQGDQSYGHAMDNLPSRIEDEDEDHGAGAESIYRHRSRFEDEVMDGFEDGGSDSDYLAVSNLSLPARGEGMEQLTLSFQGEIYMYDAVSPDKVQAVLLLLGGYEIPSGVPSVAITSQNQRFENFPGRSSLPQRAASLSRFREKRKERCFDKKIRYSVRKEVALRMQRKKGQFTSSKPSATENSVQDEQQPETLCTHCGTSSKSTPLMRRGPAGPRTLCNACGLMWTNKGTLKYLSTSSTVETQNPSMSQIVQSTEEVCLSPKDYEFNLACKLLLHGLVFFLVLVIKLLYRILLFLKG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00469 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 246 - -
Eupl13g00469 308 ProSiteProfiles GATA-type zinc finger domain profile. 199 255 IPR000679 GO:0006355|GO:0043565
Eupl13g00469 308 MobiDBLite consensus disorder prediction 178 199 - -
Eupl13g00469 308 Pfam GATA zinc finger 205 241 IPR000679 GO:0006355|GO:0043565
Eupl13g00469 308 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Eupl13g00469 308 Gene3D - 195 258 IPR013088 GO:0006355|GO:0008270
Eupl13g00469 308 MobiDBLite consensus disorder prediction 179 199 - -
Eupl13g00469 308 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Eupl13g00469 308 PANTHER GATA TRANSCRIPTION FACTOR 28 9 261 IPR045280 GO:0006355
Eupl13g00469 308 SMART tify_2 78 113 IPR010399 -
Eupl13g00469 308 Pfam CCT motif 144 186 IPR010402 GO:0005515
Eupl13g00469 308 CDD ZnF_GATA 205 243 IPR000679 GO:0006355|GO:0043565
Eupl13g00469 308 MobiDBLite consensus disorder prediction 25 45 - -
Eupl13g00469 308 MobiDBLite consensus disorder prediction 1 45 - -
Eupl13g00469 308 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Eupl13g00469 308 SMART GATA_3 199 260 IPR000679 GO:0006355|GO:0043565
Eupl13g00469 308 Pfam tify domain 83 112 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00469 Eupl-Chr13 6529375 6546712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00469 7 255 Tify Gene Family AT1G51600 46.763 1.16e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl13g00469 CCT 3.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00469 - - nnu:104611943 307.76