Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00461 ATGGATACTCAACCAGAGAAGGTTTATGTGGTTGTTGGGAATGATTTGCAAGAAGGGATGGGGACATTAGAGTGGGCACTCAGAAATTGGTTTTCTCAACCAATCTCCATTGTCATTCTCCATGTTAACAGCACTTCCAAGGATTTTGTTTACACCCCATTTGGGAAGCTTCCTGCAAGTTCTGTAAGTGATGAGAAGTTGGAGGTTTTTAGGATGTGTGAACAGGAGAAGATTGATAAATTACTTTCCAAGTATATGGTTTTCTGTGGCAAGGTGAAAGCTGAAATTGTAAAAATTGAGAAATCTGAAGAACCCATTCAAAAGGTTATCGTCGAATTGATGTCAAGGTTTCGAATGACGAAGTTGGTCATGGGAATTACATTCATGAAATCCTCATCATGGAAAGCAAAGAGTGCAATCAGTGGATCATTTTATGTCCATAAGCATAAACCCGATTTTTGCGAATTATTCATAATATGCGGAGGGAAATTGGTCGTTCTAAAAGAAGAAAACGACGTCGAAGGATGTGCCAAGGATGATCAGGGAGTTATGGTTGCTAAGATGAGGGAAAAGGCTAGTATCAAAGGCTGGTTAGGCAAAATGTTCACAGACAATCCAGCTAATTATGTGGTTCCTAACTCTAAAAAAAACCATCCTCCTCATGTGGTGCCTAATCTGCCGGATATCGGCTCTCCAGAGTCGCACAATAGGTGGGAGAATTGCACTAAAGAAGTAGAAAACTATTTACAGTGGTTGTTAACTTCGAAATTGAATGAGGAAGATTGTGAGGAAGAAGACGGTGCCGTGCGATTTAGCCCTACAGAGCTGCCAGAATTGGACCACACTGATCCTAATACGAATGTTTCAGATAAAATTGAAACATTGAGAGCTAAGATAAAGGAAGCTCACAAGACGATTGAGGAGAAAAGAACAGAAGCTAAAGCCAACGTTGAGAGACAAACAAGAGCTGAATGGGCCATCTCTGTGTGTGATCGAAGGGCGGGAGAGCTAGATGCTCGTATTAACGAAGAGATCGCTAATCAAATTGACCTAAGGAAAGACTTGAACGCAACAAGAGAACAGCTCTATGAAGTTTCAAGTGATTTTGAGGAAAGCAAGAGCAGGCTCAAATCAATCGTCGAAATCCAATCCGATCTTGCAAGCAAGCTCCGGTCTTCATCTTCGGCAAGAGCACATGCTGAAGCCCAGCTAGAGAAGGCAGTGTCCACGAGAGCCGAGACCCTCCGAGAGATCGATGAGTTGCGCCGTGAGAAAGACATCCTACGTCGGAGAATCGAATTTTGCCGAGAAAGAGAGGCGATAGCTTCAGCCGCCACATCGAACGACCTGAACTACGGTTACAGGGAGTTTACTGCTAATGAATTGAGAAAGGCCACCGATAATTTCTCGGAGCAGATGAGGTTGAAATCGAGAGGTGATCCCACGAATGTCTTCAAGGGAAGACTCAACCACACCAGCATTGCAATCAAAATGCAGGCTTCATTGAGCCATCTATGTCAAGATGAATTCCAAGCTAAGATGGAGCTGTTGTGCCAGATACGCCACCCCCATCTGATGGGCATGATCGGGGCATGCCCAGAGCTAAAATGCGTAGTCTTCGAATACATGCACAGTGGTAGCTTACAAGACGCCCTCTTCTCGTCCCACGGAAAACCTAGAAGAAGAAACCCAGTTCTCTCATGGCACACTCGCATCCGAATCGCAGCCGAGATCTTATCGGGCCTGGGCTTCCTCCACTTGGCCAAGCCCAGGCCCATTATCCACGGCAATCTCAACCCTTCCAACGTCCTCCTCGATCGCAATCTCATTGCCAAGATCGCCAATTCTCGATTTTCTAAATGCTACGATGAATCGGAGCTGCAATCAGATGTCTGCGCCTTCGGAGTTCTGATGCTGCAGCTTCTTACAGGGAGAGAAGGGGTTGGGTTGGTCGAAGAAGTGACCAGAGCAATGGAATGTGGGTCCTTGATTGGGGTTCTGGATGAGATGGCTGGAGGATGGCCGTTGGATTTGGCTGAGGAGTTTGCAAGGATCGCGATGCGGTGTGTGTATGTTAGCGAGAGACGAAGCTCGGAGATTTGGACGGCAACGGTGATGAGAGAACTGGAAGAGACGAGGAAGAAAGCAGCGGATATGGTGGCGAGGGTAGAAAATGTGGTAGTGGGGGAGGGATGTGTGGATAGAGAGGACTGCCGCGATGCACCTAGTGTTTTCCTCTGCCCAATTTTTCAGGAAGTGATGAAGAACCCATACGTGGCAGCAGATGGGTTCTCGTACGAAATGGAAGCCATAGAGGAATGGCTAGGGACAGGGCGCGGGACGTCACCCATGACCAACTTAAAGCTCGAGCACAAGATCCTCACCCCAAATCACACCCTCCGTTGTCTCATCAACGACTGGCACAACAGATCACAAAATGCACCAACATAG 2451 0.4672 MDTQPEKVYVVVGNDLQEGMGTLEWALRNWFSQPISIVILHVNSTSKDFVYTPFGKLPASSVSDEKLEVFRMCEQEKIDKLLSKYMVFCGKVKAEIVKIEKSEEPIQKVIVELMSRFRMTKLVMGITFMKSSSWKAKSAISGSFYVHKHKPDFCELFIICGGKLVVLKEENDVEGCAKDDQGVMVAKMREKASIKGWLGKMFTDNPANYVVPNSKKNHPPHVVPNLPDIGSPESHNRWENCTKEVENYLQWLLTSKLNEEDCEEEDGAVRFSPTELPELDHTDPNTNVSDKIETLRAKIKEAHKTIEEKRTEAKANVERQTRAEWAISVCDRRAGELDARINEEIANQIDLRKDLNATREQLYEVSSDFEESKSRLKSIVEIQSDLASKLRSSSSARAHAEAQLEKAVSTRAETLREIDELRREKDILRRRIEFCREREAIASAATSNDLNYGYREFTANELRKATDNFSEQMRLKSRGDPTNVFKGRLNHTSIAIKMQASLSHLCQDEFQAKMELLCQIRHPHLMGMIGACPELKCVVFEYMHSGSLQDALFSSHGKPRRRNPVLSWHTRIRIAAEILSGLGFLHLAKPRPIIHGNLNPSNVLLDRNLIAKIANSRFSKCYDESELQSDVCAFGVLMLQLLTGREGVGLVEEVTRAMECGSLIGVLDEMAGGWPLDLAEEFARIAMRCVYVSERRSSEIWTATVMRELEETRKKAADMVARVENVVVGEGCVDREDCRDAPSVFLCPIFQEVMKNPYVAADGFSYEMEAIEEWLGTGRGTSPMTNLKLEHKILTPNHTLRCLINDWHNRSQNAPT* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00461 816 PANTHER OS02G0152300 PROTEIN 8 805 - -
Eupl13g00461 816 ProSiteProfiles Protein kinase domain profile. 470 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g00461 816 ProSiteProfiles U-box domain profile. 740 814 IPR003613 GO:0004842|GO:0016567
Eupl13g00461 816 CDD RING-Ubox_WDSUB1-like 742 797 - -
Eupl13g00461 816 Gene3D Transferase(Phosphotransferase) domain 1 556 729 - -
Eupl13g00461 816 Pfam U-box domain 742 811 IPR003613 GO:0004842|GO:0016567
Eupl13g00461 816 Coils Coil 706 726 - -
Eupl13g00461 816 Coils Coil 404 438 - -
Eupl13g00461 816 SUPERFAMILY Protein kinase-like (PK-like) 450 690 IPR011009 -
Eupl13g00461 816 Coils Coil 285 323 - -
Eupl13g00461 816 SMART Ubox_2 744 807 IPR003613 GO:0004842|GO:0016567
Eupl13g00461 816 SUPERFAMILY RING/U-box 736 812 - -
Eupl13g00461 816 Gene3D Phosphorylase Kinase; domain 1 454 542 - -
Eupl13g00461 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 814 IPR013083 -
Eupl13g00461 816 Pfam Protein tyrosine and serine/threonine kinase 479 620 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00461 Eupl-Chr13 6331556 6339641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00461 6 810 U-box Gene Family AT5G65500 46.732 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Eupl13g00461 PK_Tyr_Ser-Thr 5.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00461 - - nnu:104595503 984.171