Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00433 ATGCACCGCCGGGGACGTGAAGAAGCCTACCGGTGGCCGAGTTTCTTCAAGATTATCCACTCTTCCATTATTCGAGATCAACAGCTCGGGATCCCAAGAAAGTTTATTCAGAAATTTGGAAAAGATCTGTCTGATGTTGCAGTCCTCAAGGTCCCCAATGGTGAAGCCTGGTGTGTAGAAATGACGAAAGCCAATGGCCAGATTTGGTTCCATAATGGTTGGCGGGAATTCGTCAAATATCACTCTATACGTGCCGGGCATTTTTTAGTTTTCAGATACGACGGGGACTCTAATTTTTATGTTCTTATATTCGATATGAGTGGTTCTGAGATAGGCTATCTGCGTAATTGTATGAATCTCGAAGAACCCGATCATGACGGACGATGTCTGTCGACCCAAAAGGAAGAAATTGAAGAGGAAAATTCTGTGGAAATTTTGGATGGGCATGATTCATCTGCAAAACAAGAACTACATTCATGTGCGAAGGCTAGTGCGACGAGGAGGAGGCCTGTGTCAAGCCAAGAAAAGAATATAGCAATTCAAGCAGCCAGATCATTTAAGTCCAAGCATCCGTTCTTCACAGTTATAATGCATGCATCCTATCTGCATCATAAAAGTTTTTCGATTCCAAAAACCTTTTGCATGAAATATCTTGTGAAGAAATCAAGAATTGTCACAGTTCAGGTTTCAGATGGGAGAACGTGGCCGGTTCGGTACCTTTTTAGACCCTGTGGCTCTAAGCTAAGTATGGGTTTGTCTGCATTCATACGAGAAAACAATCTGGGAGAAGGAGATGTTTGTCTCTTCGAGCTGATTAAGAAGAAGGATATTGTGCTGAAAGTTTCCATTTTTCAATCGGACCGTTGA 867 0.4256 MHRRGREEAYRWPSFFKIIHSSIIRDQQLGIPRKFIQKFGKDLSDVAVLKVPNGEAWCVEMTKANGQIWFHNGWREFVKYHSIRAGHFLVFRYDGDSNFYVLIFDMSGSEIGYLRNCMNLEEPDHDGRCLSTQKEEIEEENSVEILDGHDSSAKQELHSCAKASATRRRPVSSQEKNIAIQAARSFKSKHPFFTVIMHASYLHHKSFSIPKTFCMKYLVKKSRIVTVQVSDGRTWPVRYLFRPCGSKLSMGLSAFIRENNLGEGDVCLFELIKKKDIVLKVSIFQSDR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00433 288 Gene3D - 171 287 IPR015300 -
Eupl13g00433 288 ProSiteProfiles B3 DNA-binding domain profile. 192 287 IPR003340 GO:0003677
Eupl13g00433 288 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Eupl13g00433 288 CDD B3_DNA 13 105 IPR003340 GO:0003677
Eupl13g00433 288 CDD B3_DNA 192 284 IPR003340 GO:0003677
Eupl13g00433 288 PANTHER B3 DOMAIN-CONTAINING 12 279 - -
Eupl13g00433 288 SUPERFAMILY DNA-binding pseudobarrel domain 186 286 IPR015300 -
Eupl13g00433 288 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Eupl13g00433 288 Pfam B3 DNA binding domain 192 285 IPR003340 GO:0003677
Eupl13g00433 288 SMART B3_2 15 107 IPR003340 GO:0003677
Eupl13g00433 288 SMART B3_2 192 287 IPR003340 GO:0003677
Eupl13g00433 288 Gene3D - 8 108 IPR015300 -
Eupl13g00433 288 SUPERFAMILY DNA-binding pseudobarrel domain 11 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00433 Eupl-Chr13 5968263 5971172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00433 13 285 B3 DNA Binding Superfamily AT3G18990 35.030 1.74e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl13g00433 B3 8.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00433 - - csin:114257355 206.068