Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00432 ATGCACCGCCGGGGACGGGAAGAAGCCAACCGGTGGCCGAGTTTCTTCAAGATTATCCATTCTTCCATTATTCGAGATCAACAGCTCGGGATTCCAAGAAAGCTTATTCAGAAAATTGGAAAAGATCTGTCTGATGTTGCAGTCCTCAAGGTTCCCAATGGTGAAGCCTGGCGTGTAGAAATGAGGAAAGCCAATGGCAAGATTTGGTTCCATAATGGTTGGCGGGAATTCGTAGAATTTCACTCTATATGTGCTGGGCATTTTTTAGTTTTCAGATACGACGGGAACTCTCATTTTTATGTTCTTATATTCGATATGAGTGGTTCTGAGATAAGCTATCAGCGTAATTGTGCGAATCTCGAAGAACCCGATCATGGCAGACAATGCCCGTCGACCATAAAGGAAGAAATTGAAGAGGAAGATTCTGTGGAAATTATGGATGGGCAAGATTCATCGGCAAAACAAGAAGAGAAGGTGGGCATTCCCATTACAAAACGTCATTCATGTGCGAAGGCTAGTGCGACGATGAGGAGGCCTGTGTCAAGCCAAGAAAAGGATAGAGCAATTCAAGCAGCCAGAGCATTTAAGTCCAAGCATCCGTTCTTCACAGTTATAATACATCCATCCTATCTGAACCATAAATATTTTCCAATGCCAACATCCTTTTTCAAGGAATATCTGATAAAGAAAGTAGGAACTGTCACAGTTCAGGTTTCAGATGGGAGAACGTGGCCTGTTGGATACATTTTTAGACACCAATCCGCTAGGCTAAGTAAGGGTTTGACTGCATTCATAGGAGAAAACAATCTGGGAGAAGAAGATGTCTGTGTCTTCGAGCTGATTAAGAAGAAGGATATTGTGCTGAAAGTTTCCATTTTTCGGGTCGTTGAAGATGTGTGA 900 0.4278 MHRRGREEANRWPSFFKIIHSSIIRDQQLGIPRKLIQKIGKDLSDVAVLKVPNGEAWRVEMRKANGKIWFHNGWREFVEFHSICAGHFLVFRYDGNSHFYVLIFDMSGSEISYQRNCANLEEPDHGRQCPSTIKEEIEEEDSVEIMDGQDSSAKQEEKVGIPITKRHSCAKASATMRRPVSSQEKDRAIQAARAFKSKHPFFTVIIHPSYLNHKYFPMPTSFFKEYLIKKVGTVTVQVSDGRTWPVGYIFRHQSARLSKGLTAFIGENNLGEEDVCVFELIKKKDIVLKVSIFRVVEDV* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00432 299 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Eupl13g00432 299 ProSiteProfiles B3 DNA-binding domain profile. 201 296 IPR003340 GO:0003677
Eupl13g00432 299 SUPERFAMILY DNA-binding pseudobarrel domain 195 294 IPR015300 -
Eupl13g00432 299 Pfam B3 DNA binding domain 201 294 IPR003340 GO:0003677
Eupl13g00432 299 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Eupl13g00432 299 PANTHER B3 DOMAIN-CONTAINING 10 290 - -
Eupl13g00432 299 CDD B3_DNA 13 105 IPR003340 GO:0003677
Eupl13g00432 299 SUPERFAMILY DNA-binding pseudobarrel domain 11 107 IPR015300 -
Eupl13g00432 299 SMART B3_2 15 107 IPR003340 GO:0003677
Eupl13g00432 299 SMART B3_2 201 296 IPR003340 GO:0003677
Eupl13g00432 299 Gene3D - 180 298 IPR015300 -
Eupl13g00432 299 CDD B3_DNA 201 294 IPR003340 GO:0003677
Eupl13g00432 299 Gene3D - 7 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00432 Eupl-Chr13 5960985 5965369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00432 13 295 B3 DNA Binding Superfamily AT3G18990 36.716 1.49e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl13g00432 B3 9.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00432 - - qsu:112013466 211.846