Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00431 ATGCTTTGCTTCGACGACTCCACTGACGGCGAGAGAATTTTATTTGCCGCCGACGATTATGGTATCTCTCGAGCTATCAAAGTTAAATGGTCTTCTGTGTTACAATGGCCGTGGATCACAAATCCTACGGGGATCCCAAGAAAGTTTATTCAGAAATTTGGAAAAGATCTGTCTGATGTTGCAGTCCTCAAGGTTCCCAATGGTGAAATCAGGTGTGTAGAAATCAGGAAAGCCAATGGTCAAATTTGGTTCCATAATGGTTGGCGGGAATTCGTAGAATATCACTCTATATGTGCTGGGCATTTTTTAGTTTTCAGATATGACGGGAACTCTCATTTTTATGTTCTTATATTCGATATGAGTGGTTCTGAGATAGGCTATCTGCGTAATTGTGAGAAACTTGAAGAATCCGATCATGGATGTCTGTTGATCGAAAATGAAGAGGAAAATCCTGTGGAAATTTTGGGTGTCTTTCCTAATGGGCATGATTCATCCGTAAAACAAGAAGAGAGGGTGGGCATTCCCATTACAAAACGACATTCATGTGCAAAGGCTAGTGCGAGGATGAGGAGGCCTGTGTCAAGTAAAGCAATTCAAGCAGCCAGAGCATTTAAGTCCAAGCGTCCGTTCTTCACAGTTATATTACATACATCCTATCTGACTCATAGATTTTTGCCGATTCCATCCACCTTTGTCCAAAAATATCTGAGAGAGAAATTAGCAAATGCCACAGGAATCACACTACGGGATTCAGATGGGAGAACATGGTCTGTTGGGTACACTCTCACCGGCGCCGCTAGGATAAGTAAGGGTTTGTCTGCATTCTTACGAGGAAACAATCTGGGAGAAGGAGATGTCTGTGTCTTTGAGCTGATTAAGAAGAAGGATATTGTGCTGAAAGCTTCCATTTTTCATTGTTGA 921 0.4202 MLCFDDSTDGERILFAADDYGISRAIKVKWSSVLQWPWITNPTGIPRKFIQKFGKDLSDVAVLKVPNGEIRCVEIRKANGQIWFHNGWREFVEYHSICAGHFLVFRYDGNSHFYVLIFDMSGSEIGYLRNCEKLEESDHGCLLIENEEENPVEILGVFPNGHDSSVKQEERVGIPITKRHSCAKASARMRRPVSSKAIQAARAFKSKRPFFTVILHTSYLTHRFLPIPSTFVQKYLREKLANATGITLRDSDGRTWSVGYTLTGAARISKGLSAFLRGNNLGEGDVCVFELIKKKDIVLKASIFHC* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00431 306 CDD B3_DNA 45 119 IPR003340 GO:0003677
Eupl13g00431 306 ProSiteProfiles B3 DNA-binding domain profile. 45 121 IPR003340 GO:0003677
Eupl13g00431 306 SMART B3_2 210 302 IPR003340 GO:0003677
Eupl13g00431 306 SMART B3_2 37 121 IPR003340 GO:0003677
Eupl13g00431 306 SUPERFAMILY DNA-binding pseudobarrel domain 41 121 IPR015300 -
Eupl13g00431 306 CDD B3_DNA 210 304 IPR003340 GO:0003677
Eupl13g00431 306 SUPERFAMILY DNA-binding pseudobarrel domain 206 300 IPR015300 -
Eupl13g00431 306 Pfam B3 DNA binding domain 44 119 IPR003340 GO:0003677
Eupl13g00431 306 Pfam B3 DNA binding domain 210 302 IPR003340 GO:0003677
Eupl13g00431 306 PANTHER B3 DOMAIN-CONTAINING 35 295 - -
Eupl13g00431 306 ProSiteProfiles B3 DNA-binding domain profile. 210 306 IPR003340 GO:0003677
Eupl13g00431 306 Gene3D - 192 306 IPR015300 -
Eupl13g00431 306 Gene3D - 27 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00431 Eupl-Chr13 5951205 5957692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00431 45 304 B3 DNA Binding Superfamily AT3G18990 35.000 2.31e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl13g00431 B3 5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00431 - - qsu:112013518 189.119