Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00422 ATGCCCTCAGAGTCCGGCGACCGACGTCCAACAAAACCTCAAAACCTAGCTGCTCCACCGCCAGAGCACGAGCATCTCCCGTGCCCACGCTGCGACTCCACCAACACCAAGTTCTGTTACTACAACAACTACAATCTCTCGCAGCCTCGTCATTTCTGCAAGTCCTGTCGTCGTTACTGGACCCAAGGTGGCACCCTCCGCAACATCCCCGTCGGTGGCGGTAGTCGCAAGAACGCTAAGCGCTCCCGTACCTCCTCCGCCTCTCAAGACCCCATATCCGCCAACCCCATTTCCGTCTCTTCTGCTACCGAAGCCGATATGTTACGTGGTGATGTTAACGGGTCTGGGAGTTTTACTTCCTTGCTTAATACGCAGGGTCCTGGGTTCTTGGCGCTTGGTGGGTTCGGATTAGGGCTCGGGTCAGGGTTCGACGACATGGGGTTTGGGTTAGGCCGTAGTGTTTGGCCTTTTACGGAGGTTGGTGAAGCTGCTGCTACTGGTGTTAACTCGTGGCATCTGGGAACTGGTGGTGATAGTGGCTTCGTGGACGGTGACTGCTTTGCTTTGCCGGAGCTTGCTGTTTCTACATCCGGAAAAGGTCTGAAGTGA 609 0.5567 MPSESGDRRPTKPQNLAAPPPEHEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNIPVGGGSRKNAKRSRTSSASQDPISANPISVSSATEADMLRGDVNGSGSFTSLLNTQGPGFLALGGFGLGLGSGFDDMGFGLGRSVWPFTEVGEAAATGVNSWHLGTGGDSGFVDGDCFALPELAVSTSGKGLK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00422 202 MobiDBLite consensus disorder prediction 67 99 - -
Eupl13g00422 202 MobiDBLite consensus disorder prediction 1 26 - -
Eupl13g00422 202 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 101 IPR045174 GO:0003700|GO:0006355
Eupl13g00422 202 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Eupl13g00422 202 MobiDBLite consensus disorder prediction 78 99 - -
Eupl13g00422 202 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Eupl13g00422 202 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00422 Eupl-Chr13 5816001 5817038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00422 1 202 C2C2-Dof Transcription Factor Family AT3G50410 45.850 5.19e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl13g00422 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00422 - - nnu:104601962 292.737