Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00418 ATGGCGATTCGATTCACAGTCGCTTATTCCGGCTACCTGGCCCAGAACCTAGCCTCATCGGCCGGAATTAGGGGCGGAAATTGCCGTTTCTTTCATGAGTGCTGCGGACGTTCTCGCGTCCTCTTCCCCAACCAGAAATCTGAAGTGGATCCAGCCGCAAGGAATTTCCAGGCTGATTTCACCAGATCCAGAGCAAGAAATTGGTCGAAGACATCGGCGTCGACGTACAGTTCGCTTGCTAGCGATCTTAGATCCGGGAATTGTCAATCCCCTCTCGTTGTTGGTTTGATTTCGGTGATGAAGTCATCAGTGTATGTTTCGGGATCTACCAGTATGGGTGTTTTTGGGATCTCTTCTTCGTCGATGCTCGGATTTAAGGCGTCTTCAGTCCTCCAATTTTTCCAGGGGACGAAATGGCTCCCTTGTAATGAGATTTTCCAGGATTCTATTAGCAATGATGTTGATAAAGGTGGTACAGTTTCTTGTGATAGTGAAGATAGCGAAAGCTCCATGAAATTTTCGGAAGGGTGGGGTGGAAAATCGGTTGAAAGGAATAGCTGGCTTTCACGATTGATGAATTTTTGTTCGGACGATGCAAAGGCTGTTGTTACAGCGTTGACTGTTTCCTTGTTGCTTCGGTCTTTCCTGGCGGAGCCGAGATCAATTCCATCACTTTCTATGTATCCGACTCTTGATGTGGGGGATCGAATATTAGCGGAGAAGGTTTCATATTTTTTCAGAAAGCCCGATGTAACAGATATAGTAATCTTCAAGGCTCCCCCAATCCTAGAGGAAAACGGTTTCAGTTCAGGAGATGTCTTTATCAAAAGAATTGTGGCCAAGGCAGGAGACTATGTTGAGGTTTGCAATGGGAAGTTGTTGGTGAATGGTATCATCCAAGATGAAGATTTCATTTTAGAGCCACTTGCTTATGAAATGGAACCACTGCTTGTGCCCGAAGGCTATGTTTTTGTGATGGGGGACAATCGCAACAACAGCTTTGACTCCCATGACTGGGGTCCGCTTCCTATCAAAAACATCATTGGCAGATCAGTGTTTCGGTACTGGCCTCCTCCTAAAATATCCAACACTGTTTATGAACCACAAGCAGGGCAGAATGTTGTGGCAGTTTCTTGA 1137 0.4591 MAIRFTVAYSGYLAQNLASSAGIRGGNCRFFHECCGRSRVLFPNQKSEVDPAARNFQADFTRSRARNWSKTSASTYSSLASDLRSGNCQSPLVVGLISVMKSSVYVSGSTSMGVFGISSSSMLGFKASSVLQFFQGTKWLPCNEIFQDSISNDVDKGGTVSCDSEDSESSMKFSEGWGGKSVERNSWLSRLMNFCSDDAKAVVTALTVSLLLRSFLAEPRSIPSLSMYPTLDVGDRILAEKVSYFFRKPDVTDIVIFKAPPILEENGFSSGDVFIKRIVAKAGDYVEVCNGKLLVNGIIQDEDFILEPLAYEMEPLLVPEGYVFVMGDNRNNSFDSHDWGPLPIKNIIGRSVFRYWPPPKISNTVYEPQAGQNVVAVS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00418 378 PANTHER SIGNAL PEPTIDASE I 159 362 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl13g00418 378 FunFam Peptidase/ serine-type peptidase 224 355 - -
Eupl13g00418 378 CDD S26_SPase_I 218 350 IPR019533 GO:0004252|GO:0006465
Eupl13g00418 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 274 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl13g00418 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 318 337 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl13g00418 378 PRINTS Bacterial leader peptidase 1 (S26A) family signature 215 231 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl13g00418 378 Gene3D Umud Fragment, subunit A 211 369 - -
Eupl13g00418 378 NCBIfam signal peptidase I 201 357 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl13g00418 378 ProSitePatterns Signal peptidases I signature 3. 323 336 IPR019758 GO:0004252|GO:0016020
Eupl13g00418 378 SUPERFAMILY LexA/Signal peptidase 213 363 IPR036286 -
Eupl13g00418 378 ProSitePatterns Signal peptidases I serine active site. 224 231 IPR019756 GO:0004252|GO:0016020
Eupl13g00418 378 Pfam Signal peptidase, peptidase S26 199 356 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00418 Eupl-Chr13 5766004 5772572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00418 227 357 MADS-box Gene Family AT1G29960 33.333 5.71e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00418 K03100 - nnu:104595855 556.984