Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00400 ATGGGGCGAGTCATCCGAGCTCAGAGGAAGGGAGCGGGATCAGTCTTCAAGTCCCACACTCACCACCGCAAAGGCCCGGCTCGGTTCCGCAGCCTCGATTTCGGGGAGCGAAATGGGTATCTCAAGGGAGTCGTCACCGAAATCGTTCACGACCCGGGCCGAGGCGCCCCTCTAGCCCGAGTTACGTTCCGTCATCCGTTCAGGTACAAGCACCAGAAGGAGCTCTTCGTTGCGGCCGAGGGCATGTACACGGGCCAGTTCGTCTACTGTGGCAAGAAAGCCAATCTGATGGTTGGTAATGTGCTTCCGCTTCGATCCATCCCTGAGGGTGCAGTTGTTTGTAACGTCGAGCATCATGTGGGTGATCGAGGAGTCCTCGCTAGGGCATCCGGAGACTACGCCATCGTTATCAGTCATAACCCCGATAACGGCACCTCCAGGATCAAGCTTCCTTCTGGGGCCAAGAAGGTTGTACCTAGCGGGTGTCGGGCAATGATTGGGCAGGTCGCAGGTGGAGGGAGGACTGAGAAGCCAATGCTCAAGGCAGGCAACGCCTACCACAAGTATAGAGTGAAGAGGAACTGCTGGCCTAAGGTGCGGGGTGTGGCCATGAACCCTGTGGAGCATCCCCATGGAGGAGGAAATCACCAGCACATTGGGCACGCCAGTACCGTCCGCCGTGATGCGCCTCCTGGTCAGAAGGTGGGTCTCATTGCCGCAAGGAGGACTGGTCGGCTCCGAGGACAAGCTGCTGCCACGGCTGCCAAAGCCGACAAGAGTGTTCATGCCCATATGGACTGTACATGGGGGGCAATGGTCCAGAAGACAGAAGTCCATTGTTCGGTAGAGAAAGACATGATGTCTGTTGAAGAGAAGATCAAAACAGCAGGAGGGTTGGTGAATGGAGCACCTGTTTTGTTTGAGGAAATGAAGATTTTGAAAGAGTTTCAGGATCAGTCTGGAACGAGGAAGACTTTAAATTCCGAGCTTTGGCATGCCTGTGCTGGGCCGCTTGCTTCCTTGCCTCAAGTTGGCAGCCTTGTATACTACTTCCCCCAAGGACACAGTGAACAGGTAGCAGTTTCGACTAAAAGAACAGCAACTTCACATATACCTAACTACCCAAATCTCCCATCTCAGTTGATGTGCCAGCTTCACAATGTCACACTACATGCTGATAATGATACAGAGGAGATCTATGCTCAAATGACTCTTCAGCCGGTGAATTCTGAAAAGGATGTATTCCCCAAGCCAGATTTTGGACTAAAGTCGAGCAAGCATCCGAGTGAGTTCTTCTGCAAGACTTTAACTGCAAGTGATACAAGCACGCATGGTGGTTTCTCAGTGCCCCGTAGGGCAGCAGAAAAGCTATTCCCCCCATTGGATTATTCAATGCAACCTCCAACTCAGGAGCTTGTTGTCCGAGATTTGCACGATAATTTGTGGACATTTCGTCACATATACCGCGGTCAGCCAAAGCGACACCTTCTCACAACTGGTTGGAGTTTATTTGTGGGTGCAAAAAGGCTTAGAGCAGGTGATACTGTTCTATTTATCAGGGATGAGAAATCACACTTACTACTGGGAGTGAGACGTGCAAATCATCAGCAAACATTATTGCCATCATCAGTTCTCTCTGCTGATAGCATGCACTTTGGAGTCCTAGCAGCTGCAGCTCATGCTGCAGCTAATCGAAGCCCATTTACTATTTTCTACAATCCGAGGGCATGCCCTTCAGAGTTCGTCATTCCTTTGGCCAAATACCAAAAAGCTGTGTATGGCACCCAGGTTTCAATTGGGTTGAGATTTGGAATGATGTTTGAAACGGAGGAGTCGGGTAAGCGCAGGTATATGGGCACAATTATAGATATTAGCGACTTAGATCCACTAAGGTGGCCTAGTTCCAAGTGGCGTAATCTTCAGGTGGAGTGGGATGAACCTAGATGTGGGGAAAAACAAAACAGGGTTAGCTTATGGGAAATTGAGACTCCTGAAAGTATTTTCGTTTTACCTTCCCTGACTTCAATTCTGAAACGACCATTGCATCCTGGATTTGCTGCGGTGTCAGGAGTTGAAACTGAATGGGGCAATCTGATCAAAAGACCTTTTGTTCGGGTCTCAGAAAATGGAAATGGTGATCTCGCATACCCTCCAATTCCAAGTCTTGGTTCAGAACAACTGATCAAGATGCTTCTCAAACCTCCAAGTGTTAGTCCTGTTGGAGCCTTTTCTTCTTCCCTACAAGGTTGTGTTATTAAGGGAACTCCTCTGCAAGAGGAAGAGACATGTGCACAGACATTAGCCCAGCAGAAACCTCTGATTCTTCCTTTACAAAATTCTTTGCTCCAAAATGAGAATCATCCTCAGAAATGCCTCGACCCATTTCATGCCATGGACGCAAACTTTGTATCGCAGGCACCTATATCCGAAAATGTTCAACCTGTGAATAAAGCTGAAAATCAGTTACTACCGAGAACACATATTGCGAAACCGGAAATAGCACCTGTGGTTGCATCAGATCAGCTGAGCCAGTTGACTTCCTTGGGGAAGTGCAGCGAAGAGAAATTGGTTGGGAGCCCTTTGAATCCTCAGAAACTTGAAAATCAGCCATTATTCCTGAACCAGGGACTGTTGCAGCTGCAGACAGGTCCGCGGTTTGTGCAGCAGTTGGAACCAAATATTGTCCAGCCACATCAAACTGTCGCAACCCAATTAGAGACAGGTAACCGAAATGGCTTACTTTCTTACCCAAGTCACCTCCCATCTCAGTACTTGAACGATAAAGATTGGATGTCGTTCCCATGTCAATGTCTTGCTGAAATTCTTAAATCACCGGGACCTCTATCCAGATGTGGAATGCAAGACACATCTCTAATTCATGTGTGCCAAGAAATGGTCAAACCAATAGTGCCTTCATTGGATAAAGAAATGTGGGACCCCGAGCTGAATTACCTAAGATATTTATCTCGAGCAGAAGAACATATTTCACGGCCTCAACAAGATCCACCTACCTTTCAGAGTATCTCTAATTCATGTGGATTGAGAGATTTCTCTGAGAGAACTAAGGATCAGAGTGAGAATTACAATGGTCTTCATTTTGAAGTAAGCAGCGGTGGAAGCACTATCGTTGATCCTTCTGTTTCGAGCACAGTTTTGGATGGGTTCAGTTCACTAGGTGATGCTGGTTTCCAGAATCCTACCGATTGTTTAGTTGGTAACTTCAGTTCAAGCCAAGATGTCCAGTCTCAGATTACCACTGCAAGCCTTGCTGATTCTCAAGGCTTCTCTCTGCAAGAGTTTCCTGACAACTCAGGAGGTACATCTTCAATCAATGTTGATTTTGATGAGTGTAGGCTCTTACATAAAAGCTCGTGGAAACAAGTATCTCCACCTCTGCGAACATATACTAAGGTCCAAAAGCTAGGATCAGTTGGGAGGTCAATTGATGTTACAAGATTCAAAAACTATGAGGAGCTGCGGACTGGGATTGCATGCATGTTTGGCCTCGAAGGTCTGCTGGATGATCCAAGAGATTCAGAATGGAAACTTGTTTATGTAGATTATGAGAATGACATACTTCTTGTTGGCGATGATCCGTGGGAGGAGTTCGTTAGTTGTGTCCGCTGCATCAGAATTCTATCACCCTCTGAAGTTCAGCAGATGAGTGAAGATGGGATGCAGCTTCTTAACAACACAGTAATCTAG 3705 0.4737 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIVHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVISHNPDNGTSRIKLPSGAKKVVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKSVHAHMDCTWGAMVQKTEVHCSVEKDMMSVEEKIKTAGGLVNGAPVLFEEMKILKEFQDQSGTRKTLNSELWHACAGPLASLPQVGSLVYYFPQGHSEQVAVSTKRTATSHIPNYPNLPSQLMCQLHNVTLHADNDTEEIYAQMTLQPVNSEKDVFPKPDFGLKSSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSMQPPTQELVVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDTVLFIRDEKSHLLLGVRRANHQQTLLPSSVLSADSMHFGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYQKAVYGTQVSIGLRFGMMFETEESGKRRYMGTIIDISDLDPLRWPSSKWRNLQVEWDEPRCGEKQNRVSLWEIETPESIFVLPSLTSILKRPLHPGFAAVSGVETEWGNLIKRPFVRVSENGNGDLAYPPIPSLGSEQLIKMLLKPPSVSPVGAFSSSLQGCVIKGTPLQEEETCAQTLAQQKPLILPLQNSLLQNENHPQKCLDPFHAMDANFVSQAPISENVQPVNKAENQLLPRTHIAKPEIAPVVASDQLSQLTSLGKCSEEKLVGSPLNPQKLENQPLFLNQGLLQLQTGPRFVQQLEPNIVQPHQTVATQLETGNRNGLLSYPSHLPSQYLNDKDWMSFPCQCLAEILKSPGPLSRCGMQDTSLIHVCQEMVKPIVPSLDKEMWDPELNYLRYLSRAEEHISRPQQDPPTFQSISNSCGLRDFSERTKDQSENYNGLHFEVSSGGSTIVDPSVSSTVLDGFSSLGDAGFQNPTDCLVGNFSSSQDVQSQITTASLADSQGFSLQEFPDNSGGTSSINVDFDECRLLHKSSWKQVSPPLRTYTKVQKLGSVGRSIDVTRFKNYEELRTGIACMFGLEGLLDDPRDSEWKLVYVDYENDILLVGDDPWEEFVSCVRCIRILSPSEVQQMSEDGMQLLNNTVI* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00400 1234 CDD B3_DNA 431 532 IPR003340 GO:0003677
Eupl13g00400 1234 FunFam Auxin response factor 596 668 - -
Eupl13g00400 1234 Pfam AUX/IAA family 1176 1220 IPR033389 -
Eupl13g00400 1234 FunFam 60S ribosomal protein L2 170 247 - -
Eupl13g00400 1234 SUPERFAMILY DNA-binding pseudobarrel domain 421 561 IPR015300 -
Eupl13g00400 1234 SUPERFAMILY CAD & PB1 domains 1149 1212 - -
Eupl13g00400 1234 ProSiteProfiles PB1 domain profile. 1133 1217 IPR000270 GO:0005515
Eupl13g00400 1234 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Eupl13g00400 1234 FunFam Auxin response factor 430 534 - -
Eupl13g00400 1234 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Eupl13g00400 1234 Gene3D - 90 169 IPR014722 -
Eupl13g00400 1234 Gene3D - 1 86 IPR012340 -
Eupl13g00400 1234 FunFam Auxin response factor 1128 1222 - -
Eupl13g00400 1234 ProSiteProfiles B3 DNA-binding domain profile. 432 534 IPR003340 GO:0003677
Eupl13g00400 1234 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Eupl13g00400 1234 Pfam B3 DNA binding domain 432 533 IPR003340 GO:0003677
Eupl13g00400 1234 FunFam 60S ribosomal protein L2 1 86 - -
Eupl13g00400 1234 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Eupl13g00400 1234 Gene3D - 596 669 - -
Eupl13g00400 1234 Gene3D - 1130 1222 - -
Eupl13g00400 1234 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 323 1223 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl13g00400 1234 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Eupl13g00400 1234 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Eupl13g00400 1234 Pfam Ribosomal Proteins L2, C-terminal domain 98 224 IPR022669 GO:0003735|GO:0005840|GO:0006412
Eupl13g00400 1234 Pfam Auxin response factor 558 641 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl13g00400 1234 SMART B3_2 432 534 IPR003340 GO:0003677
Eupl13g00400 1234 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Eupl13g00400 1234 Gene3D - 430 533 IPR015300 -
Eupl13g00400 1234 FunFam 60S ribosomal protein L8 90 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00400 Eupl-Chr13 5461699 5488114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00400 305 1234 B3 DNA Binding Superfamily AT1G19850 57.811 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl13g00400 Ribosomal_L2_C 7.7e-44 CL0107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00400 K14486 - nnu:104607475 1395.56