Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00388 ATGAAGACCAGAAATGCCGAAACCCCCAAATCGGGGCCAACGAAGAAGACACCGGTGAAGAAAACCCCCGTTAAAACCCCTCCGAAACCCTCCGAAGCTTCGACAGAGTCGGTGACGCCGAAGGCTTCATCTACAACCGGACCAAAACAGTTGAAGAGCGGTGCCGCTGCAAAGACAGCTACTCCAAAGACCGCTTCGAAGCTGGAACCTAAAGTTGAAGATGCGAGTGCATCGGTTGACACTGCTCAGTCGACACCGGAAGAGAAGGTTGTTCCGGCTGCTAAATCTGCAGTGAAGAAAACGCCCGGGAAAACTAAACCCCCTTCTGCGGCTAAAACTGCTTCTACAAAGACTCTGAAATCGGTTGAAGCGGTAAAATTGGAGATTGAACAATCACCAAAGAAGGCAGAATTTGAACTTGTTACGAAGGAGGGGAAGGAAGAAGCGAATGAGGAATTGGAGGCTGTTTATGTTACAAAGGAGCCCGGGCGCATCCTGGTTAACCTGGAAGAAGATTCCAAGGAGGACGCTGAAGGGGGAGATGCTCAACTCGCTGAAGACGAGCACATTGTCGATGAGGGGATGGAGGATTATGGTGAACAAGAGGGGTTTGAAGAACCTGGGGATGAAGAGTGTGGGGAAGAGGATGTGTCGGAGCCGGACGAAGAAGCTGGGGGATTGGAAGAGGAACATATGGAAATATCAGCTCTTGCAAAGGAGAGGAAGATAAAGAAAGAGCAAGAGATTTTTGTTGGTGGGTTGGATCGGGACGCTGTGGAGGAGGATGTTAAGAAGGCTTTTGAAAAGATTGGAGAGGTTGTTGAGGTTCGGTTGCACAGGAACCCATTGACCAATAAGAACAAGGGGTACGCATTTGTGAAGTTTGCGGATAAGGAGCAAGCGTGTCGGGCATTGTCTGAGTTGAAAAATCCTGTTATACGTGGGAAGCGGTGTGGGATAGCTCCCAGCGAGGACAATGATACACTGTTCTTGGGCAATATCTGCAATACCTGGACAAAAGAAGCTATCAAGCAAAAGTTGAAAGAGTATGGAGTTGAAGGTGTTGAGAACATTACTCTTGTCCCGGATGCCCAACATGAAGGGTTGAGTCGCGGTTTTGCCTTCCTTGAGTTCTCTTGCCATGCTGATGCTATGCTTGCATACAAGCGGCTCCAGAAGCCGGATGTTATTTTCGGTCATGCTGAGAGGACTACCAAAGTCGCTTTTGCTGAACCATTACGGGAGCCAGATCCAGAGATAATGGCCCAGGTTAAGTCAGTATTTGTGGATTGGCTCCCTCCTCACTGGGATGAAGAAGGTGTGAGGGAGCATTTTAAAGGGTATGGGGACATTGAACGTATTGTGCTAGCCCGGAACATGCCTACTGCCAAGAGGAAGGATTTTGGGTTTGTTGATTTTACTACTCATGAAGCTGCTGTTGCGTGCATCGATGGTGTAAATAACACAGAATTGGGTGATGGGAAGTCAAAGACGAAAGTTAAAGCGAGACTTGCAAATCCTCTGCCCAAGACTCAGGCTGTGAAGGGTGGAATGCGTGGTGGATTTCGAATTGGTCGCACTGGTAGTGGAACATTCTCTAGATTTGGGAGAGGGTTTGGACGAGGTGGACGTCCATTCAATCGTGGCAACTTTCAACGTGGCAAGGGTTTCTATGCACGCGGAAGGGGTCGAACTGGAAGATTTGCTTTTTCAGGTGACAATGATTTTGAAAGACCATATTCTGAGTTTCGTGGACGGCGACCATTTGGTGGACGAGTAGGTGGAAGAAGGGGGTCTGTTGAAGACTTTGCATCCCGAGCTGCTACCTCGTCAAGACCTGATCTGGGCAGGCCCAAGCATAGTGCCCATGAGAGAGGCCGTGGGAAGCCCATTTACTCTAGGAGACAACCATTTTCACCAGAAGGAGAATTTAGCCGGCCTTTTGGTGGTAGGCACTTTGAGGACCCTTATATGTACGATGACAGTGGGCGTGGTATGAAACGACCATATTCTATGATGGAGCACGACCCTGGTTACTTGGAATCTAGCAGACTGCGGCCCCGGTTCGATCATCCTGATGCAGTAGTGTCGTCTCGTGGAACTCGTTATCAAGATTCATATGGAGCTGGCAGTGGTCTTTATTCACACGATTATTATGGTTCAGATTATGGTGGTAGTGCATATTCGTCTATGTATGGGGTTGATCGCACATTTGGAGGTGGCTATTACTATTAG 2235 0.4868 MKTRNAETPKSGPTKKTPVKKTPVKTPPKPSEASTESVTPKASSTTGPKQLKSGAAAKTATPKTASKLEPKVEDASASVDTAQSTPEEKVVPAAKSAVKKTPGKTKPPSAAKTASTKTLKSVEAVKLEIEQSPKKAEFELVTKEGKEEANEELEAVYVTKEPGRILVNLEEDSKEDAEGGDAQLAEDEHIVDEGMEDYGEQEGFEEPGDEECGEEDVSEPDEEAGGLEEEHMEISALAKERKIKKEQEIFVGGLDRDAVEEDVKKAFEKIGEVVEVRLHRNPLTNKNKGYAFVKFADKEQACRALSELKNPVIRGKRCGIAPSEDNDTLFLGNICNTWTKEAIKQKLKEYGVEGVENITLVPDAQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTTKVAFAEPLREPDPEIMAQVKSVFVDWLPPHWDEEGVREHFKGYGDIERIVLARNMPTAKRKDFGFVDFTTHEAAVACIDGVNNTELGDGKSKTKVKARLANPLPKTQAVKGGMRGGFRIGRTGSGTFSRFGRGFGRGGRPFNRGNFQRGKGFYARGRGRTGRFAFSGDNDFERPYSEFRGRRPFGGRVGGRRGSVEDFASRAATSSRPDLGRPKHSAHERGRGKPIYSRRQPFSPEGEFSRPFGGRHFEDPYMYDDSGRGMKRPYSMMEHDPGYLESSRLRPRFDHPDAVVSSRGTRYQDSYGAGSGLYSHDYYGSDYGGSAYSSMYGVDRTFGGGYYY* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00388 744 CDD RRM_SF 427 493 - -
Eupl13g00388 744 SMART rrm1_1 248 321 IPR000504 GO:0003723
Eupl13g00388 744 SMART rrm1_1 328 405 IPR000504 GO:0003723
Eupl13g00388 744 SMART rrm1_1 426 501 IPR000504 GO:0003723
Eupl13g00388 744 SUPERFAMILY RNA-binding domain, RBD 249 497 IPR035979 GO:0003676
Eupl13g00388 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 317 IPR000504 GO:0003723
Eupl13g00388 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 493 IPR000504 GO:0003723
Eupl13g00388 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 397 IPR000504 GO:0003723
Eupl13g00388 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 325 IPR000504 GO:0003723
Eupl13g00388 744 MobiDBLite consensus disorder prediction 533 558 - -
Eupl13g00388 744 Gene3D - 327 411 IPR012677 -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 28 60 - -
Eupl13g00388 744 Gene3D - 414 524 IPR012677 -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 194 228 - -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 1 120 - -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 616 631 - -
Eupl13g00388 744 CDD RRM_SF 249 318 - -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 194 229 - -
Eupl13g00388 744 FunFam Heterogeneous nuclear ribonucleoprotein Q 412 562 - -
Eupl13g00388 744 MobiDBLite consensus disorder prediction 587 646 - -
Eupl13g00388 744 SUPERFAMILY RNA-binding domain, RBD 322 414 IPR035979 GO:0003676
Eupl13g00388 744 Gene3D - 167 326 IPR012677 -
Eupl13g00388 744 FunFam Heterogeneous nuclear ribonucleoprotein Q 327 411 - -
Eupl13g00388 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 507 IPR000504 GO:0003723
Eupl13g00388 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 412 IPR000504 GO:0003723
Eupl13g00388 744 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 57 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00388 Eupl-Chr13 5341461 5350119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00388 249 493 Eukaryotic Initiation Factors Gene Family AT1G71770 25.969 1.05e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00388 - - ming:122083305 852.432