Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00387 ATGAAGGCTATTGCTGCCTATTTGCTTGCTGTATTGGGAGGAAACACCAGCCCTTCCTCCGATGATCTGAAAACCATCCTCTGTTCAGTTGGGGCTGAAGCTGACAATGATAGGATTGAAATGCTCCTCTCTGAAGTTACGGGTAAAGATATAGCTGAACTTGTTGCTTCTGGAAGGGAGAAGTTAGCTTCTGTGCCTTCTGGTGGTGGTGCTGTCGTTGCAGTGGCGGCGTCTGGTGGTGCCGCAGCACCTGCTGCAGCTGAGCTTAAGGATGAGAAAATGGAAGAGAAAGAGGAGTCTGAGGATGAGGATCTGGGCTTCAGTCTGTTTGATTGA 336 0.494 MKAIAAYLLAVLGGNTSPSSDDLKTILCSVGAEADNDRIEMLLSEVTGKDIAELVASGREKLASVPSGGGAVVAVAASGGAAAPAAAELKDEKMEEKEESEDEDLGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00387 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 111 IPR044076 GO:0002182|GO:0003735|GO:0022625
Eupl13g00387 111 MobiDBLite consensus disorder prediction 95 111 - -
Eupl13g00387 111 Hamap 50S ribosomal protein L12 [rpl12]. 2 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Eupl13g00387 111 Gene3D - 1 59 IPR038716 -
Eupl13g00387 111 FunFam 60S acidic ribosomal protein P2 1 59 - -
Eupl13g00387 111 MobiDBLite consensus disorder prediction 86 111 - -
Eupl13g00387 111 Pfam 60s Acidic ribosomal protein 17 110 - -
Eupl13g00387 111 CDD Ribosomal_P2 1 67 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00387 Eupl-Chr13 5332973 5336456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00387 1 111 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 59.459 1.91e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00387 K02943 - nnu:104586918 114.775