Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00385 ATGGTTCGAAGAGTCAAGAAACTAATTTCCAACATTAGTGCTGAAAGCCAATGTAACATGGATGGCGGTGGACAGCGTGAAAGTGGGAGACACAAGCTGGATCATTACAAAGGGGTTCACAATCAGTGGATTATCCCTCCACATATGATGGAGGACCACCATGCCTTGACGATGAAGTTCATGAGCATCGTAACTGAGAGAGACACCGCAATCCAAGAACGGGACTTGGCCCTCTCAGAAAAAAAAGCGGCCTTGACTGAGCGAGATATGGCGATTCTGCAGCGAGATGCAGCCATTGCCGAGCGGAATAATGCTTTAATGGAACGAGACAACGCCATTGCAGCGTTTGAGTACCGGGAAAATGCCACCATGAATGGCAGTAGTGCACCCATATGCCCACCAGGATGCAGAGTCCCTCGTGGGACAAAGCACATGCACCACCCACAGCACATGCATCATCCTCCCCACTTGGCTGAAGCTCCTTACCATATGAGGGAGATGCACATAAGTGACGCTTTCCCAATGTCAGTGGTTGCTTCTGAGGCTGTCAAGCCCCAGCGGGCTAAGCGAACGAAGGAAACCAAGGCTGTGTTATCAAAGATGTCAAAGCTGTCGAGGAAGGGTAAGAGGGGAGGGGAGGACTTGAACAAGCAGGTCACTGTTGCCAAGCTGCATGAGTGGAAGAGTGGACTGGGAATGGGTGGTAGCGGTGAAGATCTGAACAAGCAGCTGGTGGCATCAAAGCCGGAATGGAAGGGTCAGGACCTGGGATTGAACCAGGTTGCATTTGATGACTCGACCATGCCGGTGCCTGTTTGCTCATGCACCGGCTCCCTCCAGCAGTGCTATAAATGGGGGAACGGGGGTTGGCAGTCTGCCTGCTGCACCACTACCTTGTCAATGCATCCCCTACCAGTGATGCCCAACAAGCGCCATGCCCGCATTGGTGGCAGGAAGATGAGTGGCAGCGCATTTACCAAATTGCTCAGTCGGCTGGCAGCAGAGGGACACGATCTGTCAACCCCGCTTGATCTCAAGGATCACTGGGCCAAACATGGGACGAATCGCTACATAACCATCAAGTAA 1086 0.5239 MVRRVKKLISNISAESQCNMDGGGQRESGRHKLDHYKGVHNQWIIPPHMMEDHHALTMKFMSIVTERDTAIQERDLALSEKKAALTERDMAILQRDAAIAERNNALMERDNAIAAFEYRENATMNGSSAPICPPGCRVPRGTKHMHHPQHMHHPPHLAEAPYHMREMHISDAFPMSVVASEAVKPQRAKRTKETKAVLSKMSKLSRKGKRGGEDLNKQVTVAKLHEWKSGLGMGGSGEDLNKQLVASKPEWKGQDLGLNQVAFDDSTMPVPVCSCTGSLQQCYKWGNGGWQSACCTTTLSMHPLPVMPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSTPLDLKDHWAKHGTNRYITIK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00385 361 PANTHER - 40 361 IPR010409 -
Eupl13g00385 361 SMART GAGA_bind_2 20 361 IPR010409 -
Eupl13g00385 361 MobiDBLite consensus disorder prediction 184 211 - -
Eupl13g00385 361 Coils Coil 83 110 - -
Eupl13g00385 361 MobiDBLite consensus disorder prediction 185 211 - -
Eupl13g00385 361 Pfam GAGA binding protein-like family 20 361 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00385 Eupl-Chr13 5306930 5314733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00385 20 361 BBR or BPC Transcription factor family AT2G21240 46.974 2.80e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Eupl13g00385 GAGA_bind 2.8e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00385 - - nnu:104602053 512.686