Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00384 ATGACGAAGCAGCCCGAGAAGCCGGTGACGGATAAGAAGCCAAAGGCTCAGAAAGAGAAGAAAACCAAAGTGGTCAAGGCCTCTCACCCTTCTCATCCTCCTTACTTCCAGATGATCCAGGAAGCACTATTTGCCCTGCACGAGAGGAGCGGTTCGAGTCCTTACGCCATTGCTAAGTACATGGAAGAGAAGTACAAGGGCGTCCTGCCTGAAAATTTCAAGAAAATATTGGCTATTCAGTTGAAGAACGGTGTTGCAAAAGAGAAACTGATCAAAATAAAGGCATCTTTTAAGCTTTCTGAATCAGGCAAGAAAGAGAAACCTGCAAAAGCTGAAGCCGAGAAGAAACCTAAACAGGCAAAAGCTGCTGCTGCTCCGAAGGTGAAAGTTGTGAAGAAGACGGAGACTCCGAAGAAGGCTGCAGTGCCGGTTAAGAAGGTCGGTGTGAAGAAGGCAAAGAAAACGACCCCTGCGAAGCCCAAGCAACCCAAATCAATCAAGTCTCCCGCCGCAAAGAAAGCTAAGAAGAAAGTCACTGCTTGA 543 0.4733 MTKQPEKPVTDKKPKAQKEKKTKVVKASHPSHPPYFQMIQEALFALHERSGSSPYAIAKYMEEKYKGVLPENFKKILAIQLKNGVAKEKLIKIKASFKLSESGKKEKPAKAEAEKKPKQAKAAAAPKVKVVKKTETPKKAAVPVKKVGVKKAKKTTPAKPKQPKSIKSPAAKKAKKKVTA* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00384 180 PANTHER HISTONE H1 6 171 - -
Eupl13g00384 180 SUPERFAMILY "Winged helix" DNA-binding domain 28 111 IPR036390 -
Eupl13g00384 180 Pfam linker histone H1 and H5 family 32 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00384 180 SMART h15plus2 29 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00384 180 MobiDBLite consensus disorder prediction 1 32 - -
Eupl13g00384 180 MobiDBLite consensus disorder prediction 1 26 - -
Eupl13g00384 180 Gene3D - 26 108 IPR036388 -
Eupl13g00384 180 MobiDBLite consensus disorder prediction 144 180 - -
Eupl13g00384 180 PRINTS Histone H5 signature 45 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl13g00384 180 PRINTS Histone H5 signature 115 129 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl13g00384 180 PRINTS Histone H5 signature 152 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl13g00384 180 PRINTS Histone H5 signature 18 39 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl13g00384 180 CDD H15 30 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00384 180 MobiDBLite consensus disorder prediction 100 180 - -
Eupl13g00384 180 MobiDBLite consensus disorder prediction 100 121 - -
Eupl13g00384 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 31 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00384 Eupl-Chr13 5300237 5301560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00384 33 105 Single Myb Histone (SMH) Gene Family AT1G72740 36.486 3.25e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00384 K11275 - nnu:104602052 153.68