Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00374 ATGCGAACACTTTGCGACGTTTGCGAGAGCGCTGCCGCCATCCTTTTCTGCGCTGCCGATGAGGCCGCTCTCTGCCGCTCCTGCGACGAGAAGGTCCACATGTGTAACAAGCTTGCCAGTCGACATGTACGGGTCGGGCTTGCTGCCCCCAGTGATGTTCCTCGCTGTGACATATGCGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTGTGCTTGCAATGCGATATGATTGTACATGTTGGAGGTAAAAGAACCCATGGAAGATATCTCCTATTGAGGCAGAGGGTCGAGTTTCCAGGAGATAAACCTGGCCATTTGGAGGACCTGGCCTTGCAACCCATGCATCCGGGTGAAATTAGGAGGGAAAAAAATCAATCATCTAAACTGACAACAAGAGATTACCAGCAAAATCACAGGGTCTCTCCTGTTCCAACGTTAGATGCTAACAATGGCAACCATGGCAAGATGGACACTAAAATGATTGATCTCAACACGAAGCCAAACCGGATACATGGGCAAGCTTCAAATAACCAGGGGACGGATGTTCTAAGCGGCAGTAATCATGACTCTATGAGCGTTGTTCCTGTGGGTTCTTTCAAAGGAGAACCAGAGAAATGA 633 0.4866 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAAPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGHLEDLALQPMHPGEIRREKNQSSKLTTRDYQQNHRVSPVPTLDANNGNHGKMDTKMIDLNTKPNRIHGQASNNQGTDVLSGSNHDSMSVVPVGSFKGEPEK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00374 210 SMART bboxneu5 51 96 IPR000315 GO:0008270
Eupl13g00374 210 SMART bboxneu5 1 47 IPR000315 GO:0008270
Eupl13g00374 210 CDD Bbox1_BBX-like 56 96 - -
Eupl13g00374 210 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Eupl13g00374 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 164 - -
Eupl13g00374 210 MobiDBLite consensus disorder prediction 173 198 - -
Eupl13g00374 210 Gene3D Classic Zinc Finger 2 92 - -
Eupl13g00374 210 FunFam B-box zinc finger protein 19 2 92 - -
Eupl13g00374 210 MobiDBLite consensus disorder prediction 172 210 - -
Eupl13g00374 210 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Eupl13g00374 210 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Eupl13g00374 210 CDD Bbox1_BBX-like 4 47 - -
Eupl13g00374 210 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00374 Eupl-Chr13 5103917 5106655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00374 1 210 C2C2-CO-like Transcription Factor Family AT4G38960 64.762 3.90e-91 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Eupl13g00374 zf-B_box 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00374 - - nnu:104607513 372.089