Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00367 ATGATATCGTCGAGGCTGTTCTTGCTTATCTTACTTTTCGAATGCTCGTGTTCTTCGTCGTCTTATCGAAATGGGTTGTCCGATCGAATGGTGGTAATTGAAAAGGCCTACTTGAATTGGATCAAACAGATGGGTTCCTTCATGACCCATTCTCAGTTCAACAAAGCAGAGAACAAGAACAAGTCTTGCTTAACCATAACAGTAGATCAAAATCCGAAATTCGGAGATTTTGTTTCAATTCAAAAGGCGATCGATTCGCTTCCTGTCGTTAATCTATGTAGGGTGGTTATCTACATTCATGCAGGGATATACAGAGAGAAGGTTGAGATTCCTGCAACCAAGGCTTACATTAAGCTAGAAGGTGCCGGTGCGGACAAGACCGTTATCGAGTGGGACGACACAGCGGATCGATTGGGGCCGAACGGGCGGCCATTAGGCACGTTTGCTTCTGCAACATTTGCTGTCAATTCTCCTTACTTCATTGCCAAGAACATCACCTTCAAGAACATGGCACCATTGCCACCTTCGGGAGCACTAGGAAAGCAAGCGGTGGCATTACGGATTTCGGCCGACACTGCAGCGTTCATAGGGTGCAAGTTTATCGGTGCGCAAGATACATTGTACGACCACATAGGGAGGCACTACTTCAAGAACTGTTACATCGAAGGCTCTGTCGACTTTATATTCGGTGACGGACACTCCCTCTACAATGGGTGTCATTTACACGCCGTCACGAACAGCTATGGTGCATTGACTGCGCAGAAGAGGGAGAACATGCTAGAGGAGACCGGGTTCTCATTCGTCAACTGCAGGGTAACCGGGTCGGGTGCTCTATACTTGGGAAGGGCGTGGGGCACCTTCTCTAGGGTGGTCTTTGCCTACACTTACATGGACAAGATTATCACCCCTAAGGGGTGGTATAATTGGGGTGATAAGAACAGAGAATTGACGGTATTTTATGGACAATACAAGTGTTCGGGGCCAGGAGCAGATTTCGGTGGCAGAGTATCGTGGTCGAGAGAGCTAACCCAACAACAGGCCAGACCATTCATTTCCCTTACTTTCATCGACGGTTATGAATGGCTTTCTAACTTTTAG 1098 0.4736 MISSRLFLLILLFECSCSSSSYRNGLSDRMVVIEKAYLNWIKQMGSFMTHSQFNKAENKNKSCLTITVDQNPKFGDFVSIQKAIDSLPVVNLCRVVIYIHAGIYREKVEIPATKAYIKLEGAGADKTVIEWDDTADRLGPNGRPLGTFASATFAVNSPYFIAKNITFKNMAPLPPSGALGKQAVALRISADTAAFIGCKFIGAQDTLYDHIGRHYFKNCYIEGSVDFIFGDGHSLYNGCHLHAVTNSYGALTAQKRENMLEETGFSFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDKIITPKGWYNWGDKNRELTVFYGQYKCSGPGADFGGRVSWSRELTQQQARPFISLTFIDGYEWLSNF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00367 365 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Eupl13g00367 365 Gene3D - 61 365 IPR012334 -
Eupl13g00367 365 FunFam Pectinesterase 62 364 - -
Eupl13g00367 365 Pfam Pectinesterase 74 358 IPR000070 GO:0030599|GO:0042545
Eupl13g00367 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 363 - -
Eupl13g00367 365 SUPERFAMILY Pectin lyase-like 64 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00367 Eupl-Chr13 5043948 5047734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00367 7 363 Carbohydrate Esterase AT5G47500 44.598 9.25e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00367 K01051 - nnu:104607522 605.905