Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00362 ATGGAAGAAGAGGAAGAAGGTTCAGGCGTTTACATACCTCAGCAAATCGAGCATTTAAGTGAGGACAAGTTGCAGGAGGCCGAGGACCTTTCGAACCCTCAACAGTGCGAAGTTGTCCCTGAAATGGAGGATTCGCAGCTTGTTGAAGGCTCTCCGGTCGACGCAGAAGAACCTGCCTTGATTGCAGTTGCAGATGAAGAGACGCCGATGGCGGATGTGGTGGAGATGGAGGCGGAGGTGGTGGAGATGGAGACGGAGATGGAGGTTGCGGAGACGAGCAGCATAAGTGGCGGGAAGCGCAAGCGAGGTCGGCCGGCGAGGGTCCAATCGAAAGCCCCATCGAAAACCCCATCGAAGAAGAAGACAGAGGAGGACGTTTGTTTCATTTGCTTTGATGGCGGGAACCTCGTACTCTGCGATCGCCGGGGCTGCCCGAAGGCGTACCACCCTGCTTGCATCAATCGGGATGAGGCGTTCTTCCGTTCCAAGGGTCGCTGGAATTGCGGTTGGCATATATGTAGTAACTGTGAAAAGGCTGCCCAATATATGTGCTATACGTGTACTAATTCCTTGTGCAAGGGGTGCATCAAAGAAGCTGAATTTTTATGTGTTAGAGGAAACAAAGGCTTCTGTGAAACATGTATGAGAACTGTAATGCTGATTGAAAAGAATGAGCAGGGAAACAAGGAAACGGTTCCTGTAGATTTTGATGACAAAAATAGCTGGGAGTATCTCTTCAAGGATTACTGGATAGATTTAAAAGGGAAGCTATCGTTAACATCAGATGAGCTCACTCAAGCTAGACATCCATGGAAAGGATCTGGTGTCTTGACTCGTAAAGAGGAGTCATCAGATGAACTATATGATGCTAATGATGGCCAGGGTTCTAATTCGGACAGCTCTTCTGAGCATCTTGAAGTAAGTAGTTCTAAAAGAAGAAAGGCCAAGAGACGGTCGAAGTCCAAGGTGGAGGATTCTCCCAGTGCGGCGAGAGGAGTTGGTAGCAAAGGGATCGCTATGTCTGATGACATTGAGTGGGCTTCGAAAGAGCTCTTGGAGCTTGTTGCGCACATGAAAGATGGCGATAAATCTGTTCTATCTCAGTTTGATGTCCAGGCTCTCTTGCTGGACTATATAAAACGGAACAATCTTCGTGATCCTCGTCGGAAAAGTCAAATTGTTTGCGATTCAATGCTGGAAAATCTATTTGGCAAAGCACGTGTAGGACATTTTGAAATGTTAAAGCTTCTTGAATCACACTTTCTTATAAAAGAGGATACTCAGGTGGATGATGTTCAAGCGGGGATTGTCGATACTGAGGCTAGTCAGTTGGAGGCTGAAGGTAATAGTGAAGCAACAAGGGCAGGTTCAGATAAGAGACGTAAAACACGTAAGAGAGGATTGCAGACTAATCTTGATGATTATGCAGCAATTGATGTACACAACATTAACTTACTTTACTTGCGACGTAACTTGATGGAGGATTTACTTGAAGATACTGATAAGTTCAATGACAAGGTTGTTGGTTCTTTTGTAAGAATAAGGATTTCTGGCTCTGGTCAAAAACAGGATATGTATAGGCTAGTTCAAGTTGTAGGTACTGGGAGGGTGGCAGAACCATATAAAACTGGTAAAAGGACAACAGATATTACGCTGGAAATATTAAATTTAAACAAGACAGAGATTATATCGATTGATATAATTTCGAATCAGGAGTTCTCCGAGGATGAATGCAAGCGTTTACGACAGAGCATAAAATGCGGATTGATTAGCCGAATGACAGTGGGCGAGGTTCAGGAGAAATCCATGGCTCTCCAGGCAGTAAGAGTCAATGATTGGCTGGAAACGGAGATATTGCGGCTTAGTCATCTTCGCGACCGAGCAAGTGAAAAAGGGCGAAGAAAAGAGCTTAGAGAATGTGTGGAAAAATTGCAGCTTCTGAAGACACCTGAGGAGCGTTTGCGTAGACAACAGGAAATTCCGGAAGTACATGCTGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAGGATGAAGCAGAACCAGATGATAAGAAGCGAGAGAACTACATGAGGCCAAGAGATGCTGGATTTAGTAGGAAAGGGAGGGAGCCAATCTCTCCAGGAAAAGGAGGATCGACTTCAAATGATCACTGGAGTGGAACCCAGAAAAATTCAACGACTGCCTGGGAACCAAGCAGAAATATGTCCACCAAAGGTGTCTGGGACAAAGGAGATAGTGCTGCTGGCGCTGGTGAGAGAATGAATGGATCCTCATGGAATCATGGAAGAGATGCACACCAGTCGAACAGTTGGGAGAAACCCAGAAATGAGGCGGCTGCAACTGGTTTGGACACTGATACTTGGAACAGTCAAGCTGTGGTGAAATCCGGATCATCTTCTGAAACTGCACAGGCATCTCTCTCTACAGGGGTAGCACTAATCAGTGAGACAGACAAGATATGGCATTACCAGGACCCGTCTGGGAAAATTCAAGGACCCTTTTCTATGGTTCAGTTGCGTAAGTGGAGTACAACTGGGTATTTCCCAGTCGATCTGAGAATATGGAAAACGGAAAAACAAGAAGATTCAGTACTGTTAAATGACGCATTAACTGGGAATTTCCATAAAGAGCTGCCAAAGTGGGACACCAGCTTTTCACAGCCTCAAAAAGGCACTGCTGCATCTGATAATAATAGAGAAATTAACTGGGATGGTGGCTGGAGAGGGAATAATAGTTCAACATGGACAGATAAAAAACAAAGTGATGGGCAGGGCTCTGGATCATCTGGTTGGACTGCACCGACATTAGAATTCAAGGGGGGGCAGTCTGGAAATTCCTCACATAGCTGGGACTCATCGAAGGGTAACAATGCTTGGTCTGGTCAGTCGCAAGTGCAGAGCCCACACCACTCACCCTCATTTTCTGGGAAGCCATATCGAACACCTTCCCATCAAGGAAGAGAAGTTCAAGGTGGAGGGAGATGGAACCCTGGTCAGAATCGTGGAAATACCTGGAATTCAAACAGATCCACAGGGTTTCAGCCTAGTAGTGGGCATGGTTATGAGAAACAATCCATTAATTGGGGTTCTTCTGGTCAATCTTCCGGAGAAGATTGGAGATCCCAACCAGAAAATAGTTCTTCAAAGGGCTGGGCTACTCCATCCTCGGTTGAGGTTCCTAAATTTGCCACAGAAGGATGGGTTGCTGCCCAGGGTAGTCGAAGTGAGTTGTCGAACCTCCCTACTCCTACTCCAAAGCCAAGTAGTGCAGGCTGGAAAGGGGGCCAGATTTCTGAAAACAAATGGTCACCCACTCCTACCAGTCCTGTTCAGCCAGCAAATTCTGGCTGGGGAATTGCTCCAAGCCTGGAAGGCAATGGAGCAAGGCATTCTGCTGCTGGGCTGAATGCGCCTAACAAAACCTCTTCTGGTTGGGGTGAGCAACATCATATTTCTGTTACACCTTCAGCTGGGGGATGGGACTCCAGCTCTGTGTCTGTTTCTATGCATAAGCCATCTGAAACATCAGATCGGGATAACAGCATTGATTTCTTGAATCCACCTACTCCCACCCCGAGTCAGGGTGCTGAATACAAATTGGCTATGGCTTCCCCTATTTCTGTTCAGCAAACAAGCACTGGATGGGGCAGTCCTTCAAATCCAGGAGGCAATGGGGCAGAGCAATCATCTCCCACAGTGAAAGGAGCTGCTGATTGGGGTGGACAGTCCCCCACTCCAGCAAAACCTTCTGTTGGGGAATGGGACTTGGGTGCTAGTTCTGCTTCTGGGTTGAAGCCAAATGAAACAACTGATGGTCATGATGCTGCTGTGATCCCTGAGAGTGGCCAGCTGACACTTTCTTCCACTTCACCACCCGTTTCGCTGAAGCCAACTGAGGTGGTGGATGGTACTGGTGCCTCTCGTACATTGTTTAGTCAGCAGATGAATGTTTCTGGACCCAATGCAATTAGCTCTTTGGCCAATCAATCAGTTTCTGATCTGCCCAGGAAAGATGATAATGTAACATCCTTAAGTGGCTTGGTTTCCCCTTCTTCATTGGAAAGGGGTGGTGGCGACTTGATCCAGGGTTCCAAGAATGAACATTTAAGTTCACTGCATGGTTTGAGTCCAAAAGCTGACCCAAGAATTGGTGGATTAAGGCCTGCAGATGCTCGGCAAATTCCTTCTCAATCTACGACAACAGATGAGCCACATGGGGTTTCACAGGGTGTTCTTGATCCTCAAAAAAAGTCTGGAGCACAATTACTTACAGGTACTGAAGTGGATGGGGAAACAAGACCTGATGATGTTTCAGCTAATGTGTTGATGGAAACCCACAGCTTTGTGCCAGAACCTCCACCTGCTTCGGTCCGTGCCTCAACGAATACAGGTGTCGACTTGGTTTCTGATGTAACTCCATCCAAGACTGCTGATCCGAGTGTCTTGAACTGGGTTTCATCTGGCACTAGTTATAATGCTCCAGAAGAAAATCATGGGTGGGGGTCTGATTCAGTTCAAAAGTCAGAAATGGATCCCCGACCTGGGTTAGTATCTCATGGATGGGGACCTGTTCCAGCTCAGAAACAAGAACCACCTACTTCAAGTCCCACACCTGCACCTGCAGTTCAAGTACTAGAACAACCAGTTTATGGCCACTGGGGTGATGGTCCATCTTCCGAACATAATTCTGTTGCATCTTTGGGTACAGTTGATCAAGCTGGAAATCATCCCATTCCTGGCTTCTCAGTTCCGGACTCAGCACCCTCTGGTAACTGGGCCGGTCCACCAAACACAAATAGTGATGATCAGTCGACATCATCAACAGCTCTACCATTGACCAAGCCTTCGAGCTGGGACATGGGTCCTGGTGCAGCCATGGGCTGCAGTCAAAACAATTTGTTGGCCATCTCTGATACTCAGAGACCACTGATATCCGGTAACCAATGGGAAACAGGTCCAAGCATGCAGCCTTTTGTGCCAGCCACCACAGGTTGGGTCACGGGAGCCAAGGAAAATCCAAACGTGCTGCCTCCTGTGCTAGCCACCACAGGTTGGGGCATGGGAGCCAAGGAAAATCCAAGCACTGGTTGGAGACCAACACCCGAAAATTCAAACCCAGGTTGGCGGCCTCCACAGGGAAATGCAAACATGGGCTGGGCAGGATCGGTACAAGGAAGTATGAGCATGGGTTGGGGGGCAGCACCACAGGGAAACACAACTACTGGTCAGGGAACAATGCCACAGGGAAATGCTAATATGGGTTGGGGGGCACCAGCTGGAAGCACAGGCATGTGGGGGAACCAACAGAAACACAATGGGGACAGATTTTCTGGTCATCGGGACTGGGGTGGTGGTAGGCCGTCGTGGAACAGGCAGTCGTCATTTGGCAGTGGAGGTGGGGGAGGGGGAGGGTCTTCCAGGCCTCCTCCCAAAGGGCAGAGAGTGTGCAAATACCATGAGAGCGGGCATTGCAAGAAAGGAGCAGACTGTGATTATCTGCACCCATGA 5511 0.4787 MEEEEEGSGVYIPQQIEHLSEDKLQEAEDLSNPQQCEVVPEMEDSQLVEGSPVDAEEPALIAVADEETPMADVVEMEAEVVEMETEMEVAETSSISGGKRKRGRPARVQSKAPSKTPSKKKTEEDVCFICFDGGNLVLCDRRGCPKAYHPACINRDEAFFRSKGRWNCGWHICSNCEKAAQYMCYTCTNSLCKGCIKEAEFLCVRGNKGFCETCMRTVMLIEKNEQGNKETVPVDFDDKNSWEYLFKDYWIDLKGKLSLTSDELTQARHPWKGSGVLTRKEESSDELYDANDGQGSNSDSSSEHLEVSSSKRRKAKRRSKSKVEDSPSAARGVGSKGIAMSDDIEWASKELLELVAHMKDGDKSVLSQFDVQALLLDYIKRNNLRDPRRKSQIVCDSMLENLFGKARVGHFEMLKLLESHFLIKEDTQVDDVQAGIVDTEASQLEAEGNSEATRAGSDKRRKTRKRGLQTNLDDYAAIDVHNINLLYLRRNLMEDLLEDTDKFNDKVVGSFVRIRISGSGQKQDMYRLVQVVGTGRVAEPYKTGKRTTDITLEILNLNKTEIISIDIISNQEFSEDECKRLRQSIKCGLISRMTVGEVQEKSMALQAVRVNDWLETEILRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERLRRQQEIPEVHADPNMDPSYESEEDEAEPDDKKRENYMRPRDAGFSRKGREPISPGKGGSTSNDHWSGTQKNSTTAWEPSRNMSTKGVWDKGDSAAGAGERMNGSSWNHGRDAHQSNSWEKPRNEAAATGLDTDTWNSQAVVKSGSSSETAQASLSTGVALISETDKIWHYQDPSGKIQGPFSMVQLRKWSTTGYFPVDLRIWKTEKQEDSVLLNDALTGNFHKELPKWDTSFSQPQKGTAASDNNREINWDGGWRGNNSSTWTDKKQSDGQGSGSSGWTAPTLEFKGGQSGNSSHSWDSSKGNNAWSGQSQVQSPHHSPSFSGKPYRTPSHQGREVQGGGRWNPGQNRGNTWNSNRSTGFQPSSGHGYEKQSINWGSSGQSSGEDWRSQPENSSSKGWATPSSVEVPKFATEGWVAAQGSRSELSNLPTPTPKPSSAGWKGGQISENKWSPTPTSPVQPANSGWGIAPSLEGNGARHSAAGLNAPNKTSSGWGEQHHISVTPSAGGWDSSSVSVSMHKPSETSDRDNSIDFLNPPTPTPSQGAEYKLAMASPISVQQTSTGWGSPSNPGGNGAEQSSPTVKGAADWGGQSPTPAKPSVGEWDLGASSASGLKPNETTDGHDAAVIPESGQLTLSSTSPPVSLKPTEVVDGTGASRTLFSQQMNVSGPNAISSLANQSVSDLPRKDDNVTSLSGLVSPSSLERGGGDLIQGSKNEHLSSLHGLSPKADPRIGGLRPADARQIPSQSTTTDEPHGVSQGVLDPQKKSGAQLLTGTEVDGETRPDDVSANVLMETHSFVPEPPPASVRASTNTGVDLVSDVTPSKTADPSVLNWVSSGTSYNAPEENHGWGSDSVQKSEMDPRPGLVSHGWGPVPAQKQEPPTSSPTPAPAVQVLEQPVYGHWGDGPSSEHNSVASLGTVDQAGNHPIPGFSVPDSAPSGNWAGPPNTNSDDQSTSSTALPLTKPSSWDMGPGAAMGCSQNNLLAISDTQRPLISGNQWETGPSMQPFVPATTGWVTGAKENPNVLPPVLATTGWGMGAKENPSTGWRPTPENSNPGWRPPQGNANMGWAGSVQGSMSMGWGAAPQGNTTTGQGTMPQGNANMGWGAPAGSTGMWGNQQKHNGDRFSGHRDWGGGRPSWNRQSSFGSGGGGGGGSSRPPPKGQRVCKYHESGHCKKGADCDYLHP* 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00362 1836 ProSiteProfiles GYF domain profile. 819 872 IPR003169 GO:0005515
Eupl13g00362 1836 FunFam Zinc finger CCCH domain-containing protein 19 116 216 - -
Eupl13g00362 1836 Pfam SWIB/MDM2 domain 348 421 IPR003121 -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1457 1505 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1448 1626 - -
Eupl13g00362 1836 ProSiteProfiles SWIB/MDM2 domain profile. 340 423 IPR003121 -
Eupl13g00362 1836 SUPERFAMILY Plus3-like 478 607 IPR036128 GO:0003677
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 881 981 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1766 1818 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1180 1194 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1205 1232 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1136 1172 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1282 1296 - -
Eupl13g00362 1836 CDD PHD5_NSD 126 171 - -
Eupl13g00362 1836 SMART swib_2 348 426 IPR019835 -
Eupl13g00362 1836 SUPERFAMILY FYVE/PHD zinc finger 122 178 IPR011011 -
Eupl13g00362 1836 SUPERFAMILY GYF domain 807 870 IPR035445 -
Eupl13g00362 1836 SUPERFAMILY CCCH zinc finger 1811 1835 IPR036855 GO:0046872
Eupl13g00362 1836 Coils Coil 73 93 - -
Eupl13g00362 1836 SMART PHD_3 126 172 IPR001965 -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 880 1299 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 709 735 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1592 1615 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 84 119 - -
Eupl13g00362 1836 ProSitePatterns Zinc finger PHD-type signature. 127 187 IPR019786 -
Eupl13g00362 1836 FunFam Zinc finger CCCH domain-containing protein 19 478 607 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1330 1351 - -
Eupl13g00362 1836 ProSiteProfiles Plus3 domain profile. 477 610 IPR004343 GO:0003677
Eupl13g00362 1836 SMART gyf_5 820 874 IPR003169 GO:0005515
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 289 304 - -
Eupl13g00362 1836 Gene3D - 478 607 IPR036128 GO:0003677
Eupl13g00362 1836 ProSiteProfiles Zinc finger PHD-type profile. 124 190 IPR019787 -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1393 1407 - -
Eupl13g00362 1836 Gene3D SWIB/MDM2 domain 336 430 IPR036885 -
Eupl13g00362 1836 Pfam GYF domain 822 860 IPR003169 GO:0005515
Eupl13g00362 1836 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1437 1836 - -
Eupl13g00362 1836 Gene3D - 821 877 IPR035445 -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 443 466 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 997 1055 - -
Eupl13g00362 1836 SMART rtf1 477 587 IPR004343 GO:0003677
Eupl13g00362 1836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 218 IPR013083 -
Eupl13g00362 1836 SUPERFAMILY SWIB/MDM2 domain 345 422 IPR036885 -
Eupl13g00362 1836 ProSiteProfiles Zinc finger C3H1-type profile. 1811 1836 IPR000571 GO:0046872
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 680 701 - -
Eupl13g00362 1836 CDD GYF 819 873 IPR003169 GO:0005515
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1072 1116 - -
Eupl13g00362 1836 CDD SWIB-MDM2_like 346 421 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 652 785 - -
Eupl13g00362 1836 Pfam Plus-3 domain 482 585 IPR004343 GO:0003677
Eupl13g00362 1836 CDD Bbox1 172 198 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 275 335 - -
Eupl13g00362 1836 MobiDBLite consensus disorder prediction 1330 1435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00362 Eupl-Chr13 4948509 4984866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00362 124 204 PHD Transcription Factor Family AT4G14920 35.802 3.97e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Eupl13g00362 Plus-3 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00362 - - tss:122657523 1862.43