Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00358 ATGCTCTACCAAACTCTCCCCCATTTGTTCCAATTCAACCTTTCCTTCTCATCCTCTTCTGCAACTCCTCCTCCTCTTTCTTCTTCTCACCTTCTTCCCTGCTTTGCTTCATCTCAGGCGAAAACAGAAATGGAGTTCGTGGAAACAAAAGCTTTGAAAACCAGTTTCTGGCCTGAGTTGAACATGAAATCGACCCAACAAGTGTTTTACGAGGAGTTTTGGGGTGGAAATGGACAGAATGGTGTTTCTGGGGATGATTTTTTTGTGGATGACCTTCTTGACTTCTCGAATGAAGATGTTGAAGAGGGGTTTGTTGAAGAAGAAGAAAAGGATTGTGTCTCTGTTTCTTCTCAAGAACAGAACTCGAACTCAACTCGTGTTTCTGTTAAGGATGATTTTGGGTCTGTTCCCGGTAGCGAACTCAGCGTTCCGGCGGATGATGTAGCAAGCCTTGAATGGTTATCTCATTTTGTGGAGGATTCCTTCTCAGAATTCTCTATACCGTACCAGGCTGAAAACCCACCACACAAAACTCAAACCCCAAATCAGAACTGGCCTGAACCGGAAACGGAGACTCCTTTATTTAAAACCCCAGTTCCGGCCAAAGCGAGAAGCAAACGTTCAAGAACTGGCGGACGTGTTTGGTCACTTGGATGTCCTTCGATTTCGGAATCCTCGTCTCCCTCGTCGTCTCCGTCTTCCTCTTCGTCTTCTTCAACGTCTTGTCTCATCTTCACCAACACCGGGCATGACCCTGAATTATTCTACTCTCTAGGAAAACCGCCGGCGAAGAAGCATAAAAAGAAAACGGTGACGGAGACCGGTGGAGCCCAGACGCAACGCAGGTGTAGCCATTGCGGTGTGCAGAAGACCCCACAATGGAGAACCGGTCCCTTAGGGGCTAAAACTCTCTGTAACGCATGTGGGGTTCGCTACAAATCGGGTCGGCTCTTGCCCGAATACAGACCGGCTTGTAGTCCGACTTTCTCGAGCGATGTTCATTCTAACAATCACCGCAAAGTGCTGGAGATGCGGCGCAAGAAAGATACGTCTCCACCGGAATCTGGGTTGGCTCCGGCGGTTCAAATCTTTTGA 1095 0.4813 MLYQTLPHLFQFNLSFSSSSATPPPLSSSHLLPCFASSQAKTEMEFVETKALKTSFWPELNMKSTQQVFYEEFWGGNGQNGVSGDDFFVDDLLDFSNEDVEEGFVEEEEKDCVSVSSQEQNSNSTRVSVKDDFGSVPGSELSVPADDVASLEWLSHFVEDSFSEFSIPYQAENPPHKTQTPNQNWPEPETETPLFKTPVPAKARSKRSRTGGRVWSLGCPSISESSSPSSSPSSSSSSSTSCLIFTNTGHDPELFYSLGKPPAKKHKKKTVTETGGAQTQRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSDVHSNNHRKVLEMRRKKDTSPPESGLAPAVQIF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00358 364 ProSitePatterns GATA-type zinc finger domain. 283 308 IPR000679 GO:0006355|GO:0043565
Eupl13g00358 364 MobiDBLite consensus disorder prediction 168 238 - -
Eupl13g00358 364 FunFam GATA transcription factor 274 356 - -
Eupl13g00358 364 Gene3D - 273 350 IPR013088 GO:0006355|GO:0008270
Eupl13g00358 364 ProSiteProfiles GATA-type zinc finger domain profile. 277 313 IPR000679 GO:0006355|GO:0043565
Eupl13g00358 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 279 340 - -
Eupl13g00358 364 PANTHER GATA TRANSCRIPTION FACTOR 77 354 - -
Eupl13g00358 364 MobiDBLite consensus disorder prediction 259 280 - -
Eupl13g00358 364 Pfam GATA zinc finger 283 317 IPR000679 GO:0006355|GO:0043565
Eupl13g00358 364 MobiDBLite consensus disorder prediction 344 364 - -
Eupl13g00358 364 CDD ZnF_GATA 282 339 IPR000679 GO:0006355|GO:0043565
Eupl13g00358 364 MobiDBLite consensus disorder prediction 168 190 - -
Eupl13g00358 364 SMART GATA_3 277 331 IPR000679 GO:0006355|GO:0043565
Eupl13g00358 364 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00358 Eupl-Chr13 4900420 4902317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00358 47 362 C2C2-Gata Transcription Factor Family AT5G66320 54.167 5.68e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl13g00358 GATA 5.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00358 - - nnu:104602027 413.69