Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00350 ATGAAGATCCAGTGCGACGTGTGTAACGGCGAGGAAGCCTCAGTTTTCTGCTCTGCTGACGAGGCTGCCCTCTGTGATGGCTGCGACCGTCGCGTCCACCACGCCAACAAGCTAGCTAGCAAGCACCACCGCTTCTCCCTCCTCAACCCTTCCTGCAAAGATCTCCCTCGCTGCGACGTCTGCCAGGAGAGGAGCGCCTTTGTATTCTGTCAAGAGGACCGTGCGATTCTCTGCAGAGAATGCGACCTCCCCATTCACACGGCCAACGAGCACACCCAGAAGCACAATAGGTTTCTCCTCACAGGCGTCAAACTCTCCTCCTCATCCACCTTCTTCCCCACCACCACTACCTCTTCATCCATCGGTTGTGATGCTACCTCTGATTCTAAGATGATGAACAACGTCCAGCCGTGGATCAAGAAGAAGGGTATTCCTGTCTCTATTTCTGTATCTCCCGAACTACCTGATCCACACCTGACCGAGAACACTTCAACACCATCATCATCAAAGGGTAGTGATCAAACGGCAGCAGCTAGCGAAAGGGACTCGACAAGTAGCATATCGGAGTATTTGATAGAGATGTTGCCGGGCTGGCACGTTGAAGACTTTCTCGTTTCCTCGTCTGCACCAACACATGGTTTTAAGGTTAAGACTGATGATCTTCTGCCCTTCTTGAACATCGATATTGTTGAAACCAATCTGGGTTGTTTTGCCTCTGAAGATTTGGCGATTGGGGTACCTCAAGTTCATCATCAAGCACCTCCTCTTCCTCCTCCTCCCCAAATCAATGGGCAGAAGAAGGGGACGTTGTTCAAGGAGGCCAAGAATCCAAACCCAAAGTTCATCCAGAGATGGAACGACGATGGTTTTACTGTTCCTCAGATCAGCCCTCCATCCACAAAGAGATCTAGGCTTACTCAGTAG 924 0.5087 MKIQCDVCNGEEASVFCSADEAALCDGCDRRVHHANKLASKHHRFSLLNPSCKDLPRCDVCQERSAFVFCQEDRAILCRECDLPIHTANEHTQKHNRFLLTGVKLSSSSTFFPTTTTSSSIGCDATSDSKMMNNVQPWIKKKGIPVSISVSPELPDPHLTENTSTPSSSKGSDQTAAASERDSTSSISEYLIEMLPGWHVEDFLVSSSAPTHGFKVKTDDLLPFLNIDIVETNLGCFASEDLAIGVPQVHHQAPPLPPPPQINGQKKGTLFKEAKNPNPKFIQRWNDDGFTVPQISPPSTKRSRLTQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00350 307 FunFam B-box zinc finger protein 21 1 98 - -
Eupl13g00350 307 MobiDBLite consensus disorder prediction 289 307 - -
Eupl13g00350 307 CDD Bbox1_BBX-like 5 47 - -
Eupl13g00350 307 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 300 - -
Eupl13g00350 307 MobiDBLite consensus disorder prediction 282 307 - -
Eupl13g00350 307 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Eupl13g00350 307 Gene3D Classic Zinc Finger 1 100 - -
Eupl13g00350 307 CDD Bbox1_BBX-like 58 100 - -
Eupl13g00350 307 MobiDBLite consensus disorder prediction 156 183 - -
Eupl13g00350 307 SMART bboxneu5 53 100 IPR000315 GO:0008270
Eupl13g00350 307 SMART bboxneu5 4 47 IPR000315 GO:0008270
Eupl13g00350 307 MobiDBLite consensus disorder prediction 150 183 - -
Eupl13g00350 307 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Eupl13g00350 307 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Eupl13g00350 307 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00350 Eupl-Chr13 4740769 4745262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00350 1 304 C2C2-CO-like Transcription Factor Family AT1G75540 44.477 1.15e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Eupl13g00350 zf-B_box 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00350 - - nnu:104602018 310.842