Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00348 ATGGGTCGAGGAAAGATCGAGATTAAGAAAATAGAGAATTCGACGAACAGGCAGGTTACCTACTCGAAGCGACGATCGGGGATTATGAAAAAAGCTGAAGAGCTTACTGTTCTATGTGATGCGGAGGTTTCGCTCATCATGTTCTCCAATACTTCAAAATTTTCAGAATACATCAGCCCTTCAACAACAACGAAGGGGATATTTGATCGGTATCAGCATGTTAAAGGGATCAATCTATGGAACTCGCATTACGAGAGAATGCTAGATAACTTGAACAAGCAGAAGGAGATTAATAATAAGCTCCGGAGAGAAATTAGGCAGAGGATAGGAGAAGATCATCTTAACGATCTGAGCATCGGGGAGTTGCGCGGTCTTGAGCAAAATTTGGACAGTACGTTGAGGATTGTTCGTAATCGAAAGTTTCATGTGCTCAAGACTCAGGCTGATACTTACAGGAAAAAGGTAAAGAACTTGGTTGAGGAACAAAGAAATCTCAGACGTGAGGAACAAAGAAATCTCAGACGTGAATTTGAAGGGATAGGTGAGGATCCTCACTATGGATTAGTTGATGATGGAGGAGATTATGGTGGGGCACACATTTTTGCTTTTCGCCTTCAACCGAGCCAGCCCAATCTTCATAATGTAGGAGGATACGGCTCGCACAATCTACGCCTTGCTTGA 681 0.4288 MGRGKIEIKKIENSTNRQVTYSKRRSGIMKKAEELTVLCDAEVSLIMFSNTSKFSEYISPSTTTKGIFDRYQHVKGINLWNSHYERMLDNLNKQKEINNKLRREIRQRIGEDHLNDLSIGELRGLEQNLDSTLRIVRNRKFHVLKTQADTYRKKVKNLVEEQRNLRREEQRNLRREFEGIGEDPHYGLVDDGGDYGGAHIFAFRLQPSQPNLHNVGGYGSHNLRLA* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00348 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Eupl13g00348 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 ProSiteProfiles K-box domain profile. 84 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g00348 226 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g00348 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Eupl13g00348 226 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Eupl13g00348 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl13g00348 226 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Eupl13g00348 226 Coils Coil 84 108 - -
Eupl13g00348 226 Coils Coil 148 172 - -
Eupl13g00348 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00348 Eupl-Chr13 4696546 4699244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00348 1 221 MADS-box Gene Family AT3G54340 49.345 7.22e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl13g00348 K-box 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00348 K09264 - nnu:104607542 293.508