Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00327 ATGGTTTTTCCAATTCGGACGCCTCGAGAAAAGATGGCTACTTATTACCCTAGTTCAAGCAACCAAAGAGACGTTATACCAACCCTCTATCTGAGGGACCCTGCATCCGCTTCATATCCTGAAGCACCGGTTCATCCCGGTAACATGACGATGTATCTGAACTTCTCATCTTCCGCCGGCTCCTACTCAGATACCTTAGCTGGAAATTCTCAGCTGCAGCATGAACGCGTTGAGCTCACATCTGTGGGAATGTCAGATTCAACCCCTTCGCAGCAAGGGATCTTATCGAACCTTGTTGATTCCCAGATTGGGGAGCAAGCTTACAGTGTGTGGAGGGATGGCAGGAATGAGATGTTGTTCATACAGCCTATGGGTGGCCCCACTAGCATGCAATCCATTGGTGAGCAGATGAACAGTGCAACAGATGATCTGGTCCGCAGCTCTGTCACTGGGGATCCATCGCCGGGTCTCACAAGCACCGTTCCCAAGTCCAAATACCTCAGGGCAGCACAGCAACTGCTTGATGAAATCGTCAATATCCAGAAGGCTCTGAAACAGAACGAGTCTGACAAAAACCAAAGCTTCCAAGGGTTTGGTTTAAAGGTCTCCAAAGAGACTGATTGCAGATCGAAGGATGGGGGTGCATTGCCTCCCACAACCGGGATGCCTTCAAACCCTCAAGAGTCAAGCACAAACCCCACAGGTGAGCTTTCACCTGCTGAAAGACAGGATTTACAGGACAAGATGACAAAGCTTTTGTCCATGTTGGATGAGGTTGATAGAAGATACAAACAGTACTACTATCAGATGCAGATCGTAGTGTCATCTTTTGATGTTATAGCAGGGCGTGGGGCTGCTAAACCATACACAGCACTGGCCCTCCAGACAATTTCCCGCCACTTCCGCTGCTTACGAGATGCAATCAGTGGTCAAGTTAAAGCTAACCGCAGAAGTCTCGGGGAGCAAGATACTGCAGGAAACAGCAAGGGAGGTGGAATATCTCGTCTCCGCTTTGTGGACCAGCAGCTCAAGCAACAAAGAGCTCTTCAGCAGCTTGGTATGATGCAACAACATGCTTGGAGGCCACAGCGAGGGCTGCCTGAAAGCTCCGTTTCAATCCTTCGGGCTTGGCTGTTTGAGCACTTCCTTCATCCTTACCCAACGGATTCTGATAAAATCATGCTAGCAAGGCAGACGAGCTTGACCAGAAGTCAGGTTTCAAACTGGTTTATAAATGCACGGGTGCGTCTTTGGAAACCGATGGTCGAGGAGATATACAAAGAAGAGATTGGTGACACTGAGATGGACTCAAATTCTTCATCTGATAACACACCCAAGGCAGCAAGAGACGACATTAGGGTCTCTAAGGATATGGGGGAGGAGTTGCAGCAAAACATGAAGTCTGCAACCACTGAGAAGTGCCACCCTGGACAATTCCACGAATCAAAATCCGATCTATTTCATGATGTAGAAATGTCTGGGACTACAGCAGGAGCCAGCTTTCAGAATGGGACTCACGGAGAAGATGATACAGACTATGGAGGTATGAAACTAATGGGTGACGAGAGACCCAATGCAGATAACTGTAGTCTTCTCCAGGATGCACTCATTCACTCTAATGGGAGTGACAACAGGAGGTTTATGACCGCTGCCGCTTCATACCAGATGACAGAGTTGGGGAGGTTCGGTAGTGGCGGTGGGGTGTCACTCACGTTGGGGTTGCAGCATTGCGATAATGGTGACCTGACCCATCACAATTTTGTATCCATGGTAGGGGAAGAGAGGTACAATTCAGCAGCTTCTTCTGTTGGGCCTGACACAGCAGATTACGATTGTATGGATCCCAGTAACCAACGGCAGAGGTTCAGTTCCTCCCATCTGTTGCATGACTTTGTAGCTTAA 1902 0.4869 MVFPIRTPREKMATYYPSSSNQRDVIPTLYLRDPASASYPEAPVHPGNMTMYLNFSSSAGSYSDTLAGNSQLQHERVELTSVGMSDSTPSQQGILSNLVDSQIGEQAYSVWRDGRNEMLFIQPMGGPTSMQSIGEQMNSATDDLVRSSVTGDPSPGLTSTVPKSKYLRAAQQLLDEIVNIQKALKQNESDKNQSFQGFGLKVSKETDCRSKDGGALPPTTGMPSNPQESSTNPTGELSPAERQDLQDKMTKLLSMLDEVDRRYKQYYYQMQIVVSSFDVIAGRGAAKPYTALALQTISRHFRCLRDAISGQVKANRRSLGEQDTAGNSKGGGISRLRFVDQQLKQQRALQQLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPTDSDKIMLARQTSLTRSQVSNWFINARVRLWKPMVEEIYKEEIGDTEMDSNSSSDNTPKAARDDIRVSKDMGEELQQNMKSATTEKCHPGQFHESKSDLFHDVEMSGTTAGASFQNGTHGEDDTDYGGMKLMGDERPNADNCSLLQDALIHSNGSDNRRFMTAAASYQMTELGRFGSGGGVSLTLGLQHCDNGDLTHHNFVSMVGEERYNSAASSVGPDTADYDCMDPSNQRQRFSSSHLLHDFVA* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00327 633 SMART prehox3 155 310 IPR006563 -
Eupl13g00327 633 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Eupl13g00327 633 Coils Coil 167 190 - -
Eupl13g00327 633 Coils Coil 242 262 - -
Eupl13g00327 633 SMART HOX_1 360 424 IPR001356 GO:0003677
Eupl13g00327 633 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Eupl13g00327 633 CDD homeodomain 360 421 IPR001356 GO:0003677
Eupl13g00327 633 Pfam Associated with HOX 161 309 IPR006563 -
Eupl13g00327 633 MobiDBLite consensus disorder prediction 206 241 - -
Eupl13g00327 633 MobiDBLite consensus disorder prediction 220 239 - -
Eupl13g00327 633 SUPERFAMILY Homeodomain-like 361 426 IPR009057 -
Eupl13g00327 633 MobiDBLite consensus disorder prediction 430 451 - -
Eupl13g00327 633 Gene3D - 355 434 - -
Eupl13g00327 633 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 132 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00327 Eupl-Chr13 4406614 4414356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00327 38 633 Homeobox Transcription Factor Family AT4G34610 42.723 6.97e-134 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Eupl13g00327 POX 5.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00327 - - vvi:100262246 763.066