Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00326 ATGGTTTCTCAAGAATCATCCATGGACCCAGCTTCGAATGTTGTACATCAATTCATCATCTCAGACACAGTTACAAGCCAGACCCGTTTCGAAGATCATGCTTATTCTTCTTTCCAATCTAATGGAAGAAATACAAACATGTTCCCTCCATCACTAAGTGTACTGCCTAGTCTTCAATCACTCGGGGAACAAATTTCTAGATCAGTAGAACTTGTTCAAGCTCCGGCAATATCAGAGGATTCCCCAACCTCAAGTAGGAGACATTTAATGAATCTTCTTGGAGCAGCAAAAGAGATAGATCACCAAGGCCAAGGACTGTCCCTAACACTCGGTTCTCATCTCCGGTCACGCGGGCTAGTTCCGTCTCTCCAATACAGGCAAAGATCCTTGCAATCGGAATTCACAGGCTCTAGTTATTTAATTGCTGGAGAAGCGAGAGAAGTTCATAGCCCGGGAGTGGAACACATAAATAATGATAATTCCTTCATATGTAGCACCAATGCCTCATCTTCGAGCTCACAGAACCAATCTTGTTCTACTCCATCGGAAACAGAACCTTTTGCTGCTGCTGTTGGGAATTCTAGATATCTAATTCCGGCTCAGTCTCTTCTCGAAGAAGTTGTTAGTGTTGGCAGCAAGGCTATTGATTTGGGTTCAGATAAATTAATTGGACGACTAACCCTTAATGGCAGACGAGGAGCATTTGTAGTTTCCCCTGAATTGAAAGCAGAGTTGTGCGATAATGGGTTCTTATGTTTGGAGAAACGCGAACTTCAGATTAGAATTAAGAAACTCATTGCCTTATTGGATGAGGTTGATAACAGATATGAGCACTACTATCATCAAATGGAAGAAGTGGTGTCATCATTTGAGGTGATAGCAGGCTTAGGAGCAGCCAAGACTTATACTTCTCTTGCCCTCCAAGCCATGACTAGACACTTCTGCAGCTTAAGAGATGCCATAATCGCTGAAATAAATGTGGCGCAGAGACAATTCTCTCAAGATTTACCGAGAATCCGCAGTGGTCTTTCCCAACTTAGTTTGTTTGATCAGGAGACGAGACATAATCGAGTGACTCTTCAACAACTTGGGATCATCCAAAACCAACGACAGGTGTGGAGACCGATAAGAGGGTTGCCAGAAACTTCAGTGGCAATCCTTCGCGCCTGGCTTTTTGAACACTTCCTCCATCCTTATCCCAATGATTCTGAGAAGCTAATATTGTCATCACAGACAGGCCTGAGCAAGAACCAAGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCTATGATAGAAGAGATGTACAAAGAGGAATTCCCAGAGTCTTCTATGGATTCGGATCCATCATCAGAAAACATTTCTATGACAAGGAAGAGTGACTCAGATCATGTATGA 1407 0.4293 MVSQESSMDPASNVVHQFIISDTVTSQTRFEDHAYSSFQSNGRNTNMFPPSLSVLPSLQSLGEQISRSVELVQAPAISEDSPTSSRRHLMNLLGAAKEIDHQGQGLSLTLGSHLRSRGLVPSLQYRQRSLQSEFTGSSYLIAGEAREVHSPGVEHINNDNSFICSTNASSSSSQNQSCSTPSETEPFAAAVGNSRYLIPAQSLLEEVVSVGSKAIDLGSDKLIGRLTLNGRRGAFVVSPELKAELCDNGFLCLEKRELQIRIKKLIALLDEVDNRYEHYYHQMEEVVSSFEVIAGLGAAKTYTSLALQAMTRHFCSLRDAIIAEINVAQRQFSQDLPRIRSGLSQLSLFDQETRHNRVTLQQLGIIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLILSSQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFPESSMDSDPSSENISMTRKSDSDHV* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00326 468 Gene3D - 368 447 - -
Eupl13g00326 468 SMART prehox3 185 323 IPR006563 -
Eupl13g00326 468 SMART HOX_1 373 437 IPR001356 GO:0003677
Eupl13g00326 468 ProSiteProfiles 'Homeobox' domain profile. 392 433 IPR001356 GO:0003677
Eupl13g00326 468 Pfam Associated with HOX 191 321 IPR006563 -
Eupl13g00326 468 SUPERFAMILY Homeodomain-like 379 441 IPR009057 -
Eupl13g00326 468 Coils Coil 255 275 - -
Eupl13g00326 468 CDD homeodomain 373 434 IPR001356 GO:0003677
Eupl13g00326 468 MobiDBLite consensus disorder prediction 442 468 - -
Eupl13g00326 468 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 452 - -
Eupl13g00326 468 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00326 Eupl-Chr13 4402081 4405184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00326 101 447 Homeobox Transcription Factor Family AT1G19700 43.432 2.64e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Eupl13g00326 POX 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00326 - - nnu:104610564 607.831