Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00324 ATGGCGAGAGAAGGAATTTGGTCTCAAGTTATGGCAGAAAGTGAGGTTCGGCCGCTCGATCAAACCCCCAGGACCAACCCGTTTCTTGGGAAGTTCGAGCAATACAGTCCCAACGAAGTGTACTCCAGGAGGCATAAAAGGATGAAAACAATCAGTGAAGGAAAAGATATCAGTAGCATCTCTTGGGTTTCAAGTTTGCATGCTGTAGCCAAATACAAGGAGGAAAAGACTCCTCCAAATGTTATCGATTATTCTGATCCATTTTCAGTACCCAATCTGAAGGAAGAATTGGATCGCGGTATATATGGGAGTGTGACTAAAGAGATTGAAGCCCTTCGTGCTCGAAAGTTGCAAATGCTGAATCCTTTATTTGCAATGTACCCATCACTTTCTAGTCGCCGTGTAGATTTTGCAACCCATTCGTCTGGAGGTGGTTTAGGTACTTGTGATATGTTTAAGGGGCAGAGTAAAGAAGTTCCAGAGTTGGACGATGACTGTGTTGTAATTGATGTTCCTCCAGTAGAAAATTCAAAACCACCTTGCAAATCATCTGGTGAAGAAATGCAAGAATGCGGTGGTCAAAGTATTCTATGCGTACCTGTTGGTGCTAGTTCCATAGGGCACAAGGAAACACCATATGTACATAATGACCTTCACAATTCAGTCGTAATTCTTGATTCAGATGAAGAAGATGTTGGAGATCAGATTGGGAAAGGACATGCTTCCAGTTATAACCTCGAGGCTTGTAATTTTGAAGCACCTCTGGGATCTCAAGTACAGAGCTTCTATAATCTAAAGAGAGGAAACAATCTTCTAACTCATACCAGCACATTAGTTCGTGAAGTACAGTACAATCAACAAGGAAATAACGATCAAGGGAACGCTAAAATGGTTTGGGGTACTGCGAATGCAGCAAATCGGAAGGCATCTTATCCGTATCAGGAAGTTGTCTTGAAGAAGCCAATTGATGAAAACCAAATTAAGTATTTAGTAGGCACCGATGGTGGGGACAGCAGAGTAGCAGGAGAAGAACAGAAAAGTCTTGATGCTGAAACAGCAACCAGAAAAAAAGGTGTATATGTCGGTGTACAAGACGATGTAATGACCGAGAAAAGCAATCATCAAAGTGATACAGATGATGGTCTTGCAGACATGTGGAGGGAACTGGATTTTGCGTTTGAATGTTCCAAGGATGCTGCCACAGAGAGTTCAGCTGCTGAACGCAGTGGTGGAGAGGAAGGAGAAGGATGCAACCATTCTTTTGTCCTCAAGGATGATCTGGGGTACGTTTGTCGGGTTTGTGGAGTTATTGACAGGAGCATTGAAACAATATTTGACTTCCAGTATGTAAAGGGGACAAGGACTTCAAGAACTTACATTTCTGAATCTCAGAATACCAAGGATAGAGAACAAACTGAAGTTGCTTCTTTTTCTGGACTTAATGTGTCTGAGCATGATCTAACTGCGGCTGAAATATCTGTACATCCAAGGCATATGAAGCAAATGAAGCCCCATCAACTTGAGGGCTTCAATTTCTTGCTAAGGAACTTAGTATCAGATAAACCGGGTGGGTGCATCCTGGCCCATGCTCCAGGATCTGGAAAGACGTTCATGATTATAAGCTTTATGCAGAGTTTTTTAGCTAAGTATCCCAAAGCCAGACCATTGGTTGTACTACCAAAAGGCATCCTTGCTACATGGAGGAAAGAGTTCCAAAGATGGCAAGTGGAAGACATTCCGTTGTACGACTTCTATTCTTCAAAGGCAGAAAAACGGACTCAGCAATTGGATCTGTTGAAAAACTGGGTAGAGCACAAGAGCATCCTTTTCTTAGGGTATAAGCAGTTTGCAACCATTGTTTGTGGCAGTGCAAGCAACAAGACTGCAGCTGCCTGTCATGACATACTCCTGAAGGTTCCCTCCATTCTTATTCTAGATGAAGGACACACTCCGAGGAACGAGAACACAGACGTACTCCACTCCCTTGCCAAGGTCCAAACACCTCGCAAAGTAGTACTATCAGGCACCCTATTTCAGAATCATGTCAAAGAAGTATTCAATATTTTGAACCTTGTGCGTCCAAAGTTTCTGAAGTTGGATACTTCCCGGGCTGTTGTTAGGCGTGTCATGAGCAGAGTGCAGATATCAGGTGGGAGGAGGCAGGTTAAAACTGGTGCGGATGCAATGTTCTATGACTTGGTTGAAGAGACACTCCAGAACGATGAAGATTTCAAAAGGAAGGTAACAGTCATACAAGACCTTCGTGAGATGACAAGCAAGGTTCTCCATTATTATAAAGGAGATTTCCTGGAGGAACTGCCTGGGCTTGTTGACTTAACCGTACTTCTCAATCTCAGCACCAAGCAGAAACATGCAGTTGAAAAGTTGAAGAAATTGGAGAAGTTCAAGAGAAGTTCCATGGGGAGTGCTGTCTATGTGTATCCTCAGTTGAAAGAATTCTCAGAGAATGCCACCACAGAAGACAAAGGCGGTAACTTCAATGAAGACAAGATAGATGACTTGTTAAACAAAATGGATGTCAAAGATGGGGTGAAGACCAAGTTTTTCCTCAATATCTTGGGCCTGTGTGAATCTGCCGGAGAGAAGCTACTGGTTTTCAGTCAATATCTCCTCCCACTGAAATTCTTGGAAAGGTTGGTAATTAAAACTAAGGGTTGGAGCCCTGGGAAGGAAATCTTTATGATCTCCGGCGACTCGAGTCCTGACCATCGGGAGTGGTCGATGGAGCGCTTCAACAACTCCCCTGATGCCAAGGTCTTTTTTGGTTCAATCAAGGCGTGTGGTGAGGGTATCTCTCTTGTGGGGGCATCTCGCCTCTTGATTTTGGATGTACATTTGAACCCATCGGTCACCCGTCAAGCAATTGGCCGTGCATTCCGACCAGGCCAAGTGAGAAAAGTCTATATCTACAGGTTGGTTGCTGCTGACTCCCCAGAGGAGGAAGACCACAACACCAGCTTCAGAAAGGAGTTAATTTCCAAGATGTGGTTCGAGTGGACCGAGTATTGTGGTCATCGAGACTTTGAAATGGAGACAGTCGATGTGAAGGACTGTGATGATCCGTTCTGGGAAAGCCCTTTATTAGGGGAAGATGTTAAAGTTGTGTACAAAAGGTGA 3138 0.4385 MAREGIWSQVMAESEVRPLDQTPRTNPFLGKFEQYSPNEVYSRRHKRMKTISEGKDISSISWVSSLHAVAKYKEEKTPPNVIDYSDPFSVPNLKEELDRGIYGSVTKEIEALRARKLQMLNPLFAMYPSLSSRRVDFATHSSGGGLGTCDMFKGQSKEVPELDDDCVVIDVPPVENSKPPCKSSGEEMQECGGQSILCVPVGASSIGHKETPYVHNDLHNSVVILDSDEEDVGDQIGKGHASSYNLEACNFEAPLGSQVQSFYNLKRGNNLLTHTSTLVREVQYNQQGNNDQGNAKMVWGTANAANRKASYPYQEVVLKKPIDENQIKYLVGTDGGDSRVAGEEQKSLDAETATRKKGVYVGVQDDVMTEKSNHQSDTDDGLADMWRELDFAFECSKDAATESSAAERSGGEEGEGCNHSFVLKDDLGYVCRVCGVIDRSIETIFDFQYVKGTRTSRTYISESQNTKDREQTEVASFSGLNVSEHDLTAAEISVHPRHMKQMKPHQLEGFNFLLRNLVSDKPGGCILAHAPGSGKTFMIISFMQSFLAKYPKARPLVVLPKGILATWRKEFQRWQVEDIPLYDFYSSKAEKRTQQLDLLKNWVEHKSILFLGYKQFATIVCGSASNKTAAACHDILLKVPSILILDEGHTPRNENTDVLHSLAKVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKLDTSRAVVRRVMSRVQISGGRRQVKTGADAMFYDLVEETLQNDEDFKRKVTVIQDLREMTSKVLHYYKGDFLEELPGLVDLTVLLNLSTKQKHAVEKLKKLEKFKRSSMGSAVYVYPQLKEFSENATTEDKGGNFNEDKIDDLLNKMDVKDGVKTKFFLNILGLCESAGEKLLVFSQYLLPLKFLERLVIKTKGWSPGKEIFMISGDSSPDHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRLLILDVHLNPSVTRQAIGRAFRPGQVRKVYIYRLVAADSPEEEDHNTSFRKELISKMWFEWTEYCGHRDFEMETVDVKDCDDPFWESPLLGEDVKVVYKR* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00324 1045 CDD SF2_C_SNF 841 980 - -
Eupl13g00324 1045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 695 IPR014001 -
Eupl13g00324 1045 SMART helicmild6 881 969 IPR001650 -
Eupl13g00324 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 1008 IPR027417 -
Eupl13g00324 1045 Pfam SNF2-related domain 522 798 IPR000330 GO:0005524|GO:0140658
Eupl13g00324 1045 Gene3D - 774 1025 IPR027417 -
Eupl13g00324 1045 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 73 1044 IPR044567 GO:0080188
Eupl13g00324 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 701 IPR027417 -
Eupl13g00324 1045 SMART ultradead3 498 708 IPR014001 -
Eupl13g00324 1045 Gene3D - 469 730 IPR038718 -
Eupl13g00324 1045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 855 1023 IPR001650 -
Eupl13g00324 1045 Pfam Helicase conserved C-terminal domain 854 968 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00324 Eupl-Chr13 4389695 4399001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00324 866 997 RAD5 or RAD16-like Gene Family AT5G43530 33.333 6.77e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl13g00324 SNF2_N 4.1e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00324 K10875 - ming:122074038 1342.41