Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl13g00267 | ATGTCATTCAAAAGCATTTTTCGCGAGCTGAGAGAGATGAGAGATGGGATTGGGAACATGTCAAGACGAGGGGTAGAAGGGAAGCAGGCGCACAACAGGCACAACCGGACGAGGTCGCATATCGCGCCCGATGGATTGCGGTTCCCGTCTGGATCTCTTCAACAGAGCCGATGGGCTAATCTACCACCAGAATTACTCATCGATGTGATCCAGAGGCTAGAAGCGAGCGAGACATCCTGGCCTGCAAGGCGGCATGTCATTGCTTGTGCTTCAGTTTGCAGGTCATGGAGAGAAATCACGAAAGAGATTGTGAAGACTCCAGAGGAATGTGGAAGGCTCACCTTTCCGATCTCATTGAAGCAGCCGGGGCCACGCGATTCTCCCATACAGTGCTTTATCAGAAGGGAAAGAGAGACTTCTACATATCGCCTATATCTTGGTCTGACACCTGCATTGTTGGGGGAGAATGGGAAATTGTTGTTTGCAGCTAGAAAGAGCAGAAAGGCAACGAGCACGGAATTTTTGATATCCTTGGTCACGGATGATTTCTCTCGAGCAAGCAATACATATATTGGAAAACTAAGGTCCAATTTTCTGGGCACCAAGTTCACCATTTATGACAGTCAGCCTGCATATGACACCGCAGTCCAGTCGAACAGTCGGTCAAGTCGAAGAATCCATTCCAAGCAGGTATCTCCAAGAGTCCCAGCTGGTAACTACAACATAGCCACCATATCCTACGAGCTCAATGTTCTTCGTGCTAGAGGCCCCAGGAGAATGCAATGCACCATGCAATCCATCCCCATCGCCGCAATTCAGGAAGGGGGAACCGCCCCAACGCCAACTGCATTCCCACACTCTCTTGAGGAACAATTTTCCCACATATCGGCTCCGAAATCCAAGGACCAACTTATGGATTTCAGCTCCACAAGCCTCTCGGAGCCTCCAATATCGGTCCAGAGCACAGAAGAGCCACTGGTTCTGAAGAACAAAGCACCTAGATGGCATGAACAGCTACAGTGTTGGTGCCTAAATTTTAGAGGACGTGTTACTGTGGCCTCTGTTAAGAACTTCCAGCTTGTGGCAGCTGTGGAGCCTTCCCACAATGTTTCTCTGGTGGAACAAGAGAAAGTAATACTACAGTTTGGAAAGATAGGAAAAGACATCTTCACCATGGATTATCGCTACCCGCTCTCTGCCTTCCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACTAAACCAGCCTGCGAATGA | 1257 | 0.4901 | MSFKSIFRELREMRDGIGNMSRRGVEGKQAHNRHNRTRSHIAPDGLRFPSGSLQQSRWANLPPELLIDVIQRLEASETSWPARRHVIACASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRERETSTYRLYLGLTPALLGENGKLLFAARKSRKATSTEFLISLVTDDFSRASNTYIGKLRSNFLGTKFTIYDSQPAYDTAVQSNSRSSRRIHSKQVSPRVPAGNYNIATISYELNVLRARGPRRMQCTMQSIPIAAIQEGGTAPTPTAFPHSLEEQFSHISAPKSKDQLMDFSSTSLSEPPISVQSTEEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVSLVEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* | 419 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl13g00267 | 418 | CDD | F-box_AtTLP-like | 58 | 102 | - | - | |
Eupl13g00267 | 418 | ProSitePatterns | Tub family signature 1. | 346 | 359 | IPR018066 | - | |
Eupl13g00267 | 418 | FunFam | Tubby-like F-box protein | 115 | 418 | - | - | |
Eupl13g00267 | 418 | Pfam | Tub family | 119 | 413 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 174 | 190 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 346 | 362 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 190 | 214 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 375 | 394 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 239 | 266 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 328 | 345 | IPR000007 | - | |
Eupl13g00267 | 418 | PRINTS | Tubby superfamily signature | 396 | 418 | IPR000007 | - | |
Eupl13g00267 | 418 | SUPERFAMILY | F-box domain | 48 | 101 | IPR036047 | GO:0005515 | |
Eupl13g00267 | 418 | Gene3D | - | 58 | 102 | - | - | |
Eupl13g00267 | 418 | Pfam | F-box domain | 58 | 105 | IPR001810 | GO:0005515 | |
Eupl13g00267 | 418 | MobiDBLite | consensus disorder prediction | 19 | 41 | - | - | |
Eupl13g00267 | 418 | MobiDBLite | consensus disorder prediction | 19 | 46 | - | - | |
Eupl13g00267 | 418 | FunFam | Tubby-like F-box protein | 53 | 106 | - | - | |
Eupl13g00267 | 418 | ProSitePatterns | Tub family signature 2. | 403 | 418 | IPR018066 | - | |
Eupl13g00267 | 418 | Gene3D | Tubby Protein; Chain A | 116 | 418 | IPR025659 | - | |
Eupl13g00267 | 418 | PANTHER | TUBBY-RELATED | 32 | 416 | - | - | |
Eupl13g00267 | 418 | SUPERFAMILY | Tubby C-terminal domain-like | 107 | 418 | IPR025659 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl13g00267 | Eupl-Chr13 | 3739039 | 3741282 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl13g00267 | 1 | 418 | TUB Transcription Factor Family | AT2G18280 | 58.852 | 1.35e-173 | 489 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Eupl13g00267 | Tub | 7.9e-111 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl13g00267 | K19600 | - | msin:131237967 | 697.967 |