Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00267 ATGTCATTCAAAAGCATTTTTCGCGAGCTGAGAGAGATGAGAGATGGGATTGGGAACATGTCAAGACGAGGGGTAGAAGGGAAGCAGGCGCACAACAGGCACAACCGGACGAGGTCGCATATCGCGCCCGATGGATTGCGGTTCCCGTCTGGATCTCTTCAACAGAGCCGATGGGCTAATCTACCACCAGAATTACTCATCGATGTGATCCAGAGGCTAGAAGCGAGCGAGACATCCTGGCCTGCAAGGCGGCATGTCATTGCTTGTGCTTCAGTTTGCAGGTCATGGAGAGAAATCACGAAAGAGATTGTGAAGACTCCAGAGGAATGTGGAAGGCTCACCTTTCCGATCTCATTGAAGCAGCCGGGGCCACGCGATTCTCCCATACAGTGCTTTATCAGAAGGGAAAGAGAGACTTCTACATATCGCCTATATCTTGGTCTGACACCTGCATTGTTGGGGGAGAATGGGAAATTGTTGTTTGCAGCTAGAAAGAGCAGAAAGGCAACGAGCACGGAATTTTTGATATCCTTGGTCACGGATGATTTCTCTCGAGCAAGCAATACATATATTGGAAAACTAAGGTCCAATTTTCTGGGCACCAAGTTCACCATTTATGACAGTCAGCCTGCATATGACACCGCAGTCCAGTCGAACAGTCGGTCAAGTCGAAGAATCCATTCCAAGCAGGTATCTCCAAGAGTCCCAGCTGGTAACTACAACATAGCCACCATATCCTACGAGCTCAATGTTCTTCGTGCTAGAGGCCCCAGGAGAATGCAATGCACCATGCAATCCATCCCCATCGCCGCAATTCAGGAAGGGGGAACCGCCCCAACGCCAACTGCATTCCCACACTCTCTTGAGGAACAATTTTCCCACATATCGGCTCCGAAATCCAAGGACCAACTTATGGATTTCAGCTCCACAAGCCTCTCGGAGCCTCCAATATCGGTCCAGAGCACAGAAGAGCCACTGGTTCTGAAGAACAAAGCACCTAGATGGCATGAACAGCTACAGTGTTGGTGCCTAAATTTTAGAGGACGTGTTACTGTGGCCTCTGTTAAGAACTTCCAGCTTGTGGCAGCTGTGGAGCCTTCCCACAATGTTTCTCTGGTGGAACAAGAGAAAGTAATACTACAGTTTGGAAAGATAGGAAAAGACATCTTCACCATGGATTATCGCTACCCGCTCTCTGCCTTCCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACTAAACCAGCCTGCGAATGA 1257 0.4901 MSFKSIFRELREMRDGIGNMSRRGVEGKQAHNRHNRTRSHIAPDGLRFPSGSLQQSRWANLPPELLIDVIQRLEASETSWPARRHVIACASVCRSWREITKEIVKTPEECGRLTFPISLKQPGPRDSPIQCFIRRERETSTYRLYLGLTPALLGENGKLLFAARKSRKATSTEFLISLVTDDFSRASNTYIGKLRSNFLGTKFTIYDSQPAYDTAVQSNSRSSRRIHSKQVSPRVPAGNYNIATISYELNVLRARGPRRMQCTMQSIPIAAIQEGGTAPTPTAFPHSLEEQFSHISAPKSKDQLMDFSSTSLSEPPISVQSTEEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVSLVEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 419
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00267 418 CDD F-box_AtTLP-like 58 102 - -
Eupl13g00267 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Eupl13g00267 418 FunFam Tubby-like F-box protein 115 418 - -
Eupl13g00267 418 Pfam Tub family 119 413 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Eupl13g00267 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Eupl13g00267 418 SUPERFAMILY F-box domain 48 101 IPR036047 GO:0005515
Eupl13g00267 418 Gene3D - 58 102 - -
Eupl13g00267 418 Pfam F-box domain 58 105 IPR001810 GO:0005515
Eupl13g00267 418 MobiDBLite consensus disorder prediction 19 41 - -
Eupl13g00267 418 MobiDBLite consensus disorder prediction 19 46 - -
Eupl13g00267 418 FunFam Tubby-like F-box protein 53 106 - -
Eupl13g00267 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Eupl13g00267 418 Gene3D Tubby Protein; Chain A 116 418 IPR025659 -
Eupl13g00267 418 PANTHER TUBBY-RELATED 32 416 - -
Eupl13g00267 418 SUPERFAMILY Tubby C-terminal domain-like 107 418 IPR025659 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl13g00267 Eupl-Chr13 3739039 3741282 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00267 1 418 TUB Transcription Factor Family AT2G18280 58.852 1.35e-173 489
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl13g00267 Tub 7.9e-111 CL0395
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00267 K19600 - msin:131237967 697.967