Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00258 ATGGAATTGAGAGGCCAAGACATGGGAATAGGGATGCCAATCTCATTAGGTTATAATCCTCCAATTCGAGAAACATCCTCCAAATTATCCCCCACATCTATAATTTCAACAACTGGAGTAGAAAAAAGAAGAGATGGAACTGGTAATGGAACTGAAATCATCAACCCATCTCAAATCCTGGATCATCATCATCTTCATCATCATCGCCAGCATCAACAACAACAAAACCGACAAGTACCACCACCACCACCACAACACAACCAACAAAGAGATCCGGAGCCAGACCCAGACCCAGATCCAGTTCCAGTCTCAATTGCAGTTGCTGGTGTAACAGGTGCACCAGTTACAGGTGGATCGAACCCGAGGACGCCAACAACCAAGACCGCAGTCTCCGTTCGGTATCGAGAATGTCTCAAGAATCATGCGGCGAGCATCGGTGGGCATGTCGTTGATGGTTGCGGTGAATTCATGCCGAGCGGCGAAGAACGGACACCAGAAGCCCTAAAATGCGCAGCGTGCGATTGTCACCGGAACTTCCACCGGAAAGAGGTTGTGGGAGAGCCTCAATCAGGTGCCAATTGCTACTATTGCTACAACCCACATAACAGAACCAGCAGCGGTAGAAGTATGATCCCACCTCCTCCGATACCACCATCGTTACCTCCGCCACCTCTTCAACAGCACCATAAATTCTCATTAGGGTTACCGACTAGTCCTCCCATGATGATGACCTTTGGTGGTGGTGGTGGCGCGACCGAATCGTCAAGCGAGGACCTCAATGTGTACCAGTCCAATGCCGGGGCATCGCAGCCACCCCCACCACCGTTTTCCGTATCAAAGAAGCGGTTTCGAACGAAATTCAGTCAGGAGCAGAAAGAGAAGATGTTGGAGTTTGCAGAAAAAGTTGGATGGAGGATCCAAAAGCAAGACGAGCCAGCAGTCCAGCAATTTTGTGCTGAGGTGGGTATCAAGAGACAGGTTCTCAAGGTTTGGATGCACAACAACAAGCACTCCATGAAGAAGGAATTGTAA 1032 0.4922 MELRGQDMGIGMPISLGYNPPIRETSSKLSPTSIISTTGVEKRRDGTGNGTEIINPSQILDHHHLHHHRQHQQQQNRQVPPPPPQHNQQRDPEPDPDPDPVPVSIAVAGVTGAPVTGGSNPRTPTTKTAVSVRYRECLKNHAASIGGHVVDGCGEFMPSGEERTPEALKCAACDCHRNFHRKEVVGEPQSGANCYYCYNPHNRTSSGRSMIPPPPIPPSLPPPPLQQHHKFSLGLPTSPPMMMTFGGGGGATESSSEDLNVYQSNAGASQPPPPPFSVSKKRFRTKFSQEQKEKMLEFAEKVGWRIQKQDEPAVQQFCAEVGIKRQVLKVWMHNNKHSMKKEL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00258 343 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 133 184 IPR006456 -
Eupl13g00258 343 NCBIfam homeobox domain, ZF-HD class 280 336 IPR006455 -
Eupl13g00258 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 89 338 - -
Eupl13g00258 343 FunFam Zinc-finger homeodomain protein 2 271 341 - -
Eupl13g00258 343 MobiDBLite consensus disorder prediction 21 56 - -
Eupl13g00258 343 MobiDBLite consensus disorder prediction 21 104 - -
Eupl13g00258 343 SUPERFAMILY Homeodomain-like 269 341 IPR009057 -
Eupl13g00258 343 Gene3D - 272 341 - -
Eupl13g00258 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 134 183 IPR006456 -
Eupl13g00258 343 Pfam ZF-HD protein dimerisation region 132 184 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00258 Eupl-Chr13 3648947 3651425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00258 57 342 ZF-HD Transcription Factor Family AT2G18350 42.414 5.75e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl13g00258 ZF-HD_dimer 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00258 - - nnu:104601849 418.698